Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5084 ATGGCAGTACACGGCGGCGAAGTAGATCCAAGAAGCGGCTTCTGCAAGTCCACCAAAATCTTCCACAGCAAACGCCGCCCAATCCCTCTTCCCCCCAACCAATCCCTTGATGCGACGACGTTTATCTCTTCCCGCCCTCACAACGGCAAAATTGCCCTCATCGACGCCACCACCGGCCAGCACATCACCTATTCCCACCTCTGGGAATCCGTCGATTCCGTCGCCGCTTCTCTCTCCGACATGGGCATACGAAAAGGCCACGTCATCCTCCTCCTCTCCCCTAACTCCATTTTCTTCCCCATTATTTGTCTCGCCGTCATGTCCATCGGCGCCATCATCACCACCACAAATCCCCTCAATACCCCCCAAGAAATCGCCAAGCAGATCGCCGATTCAAAACCCATTTTAGCCTTCACGACCCAACAACTAATCCCCAAAATCGCCAGCTCCAAATTGCCGATCGTCCTAATCGACGGCCAAATTCAAAACTCCCCAGTGAAAATCGTGTCGACATTGAACGAAATGATGAGGAAAAAACCCAGTGGGAGTAGAATTAAGGAGCGGGTTGAGCAAAACGACACAGCGACTCTGCTTTATTCGTCTGGAACGACAGGGGCGAGCAAGGGCGTAGTTTCGTCCCATAAAAATTTAATTGCGATGGTTCAAGTCGTTGTGACGAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATCTGTACGGTTCCGATGTTTCATATTTATGGGCTTGTGGCTTTCGCTACGGGTCTGCTCTCGTCGGGATCGACGATTGTCGTGTTGTCGAAGTTCGAAATTCATGAGATGTTGTCGGCGATTGAGAAGTACAGGGCCACGTATCTGCCTCTTGTGCCGCCGATTCTGGTGGCGCTGGTGAACGCCGCGGAGCAGATAAAGGGGAAATACGATTTGGGGTCGTTGCACACGGCGTTGTCCGGCGGCGCGCCACTGGGAAAGGAGGTGATTGAGGGTTTTGTTGAGAAGTATCCAAATGTTTCGATTCTTCAGGGATATGGGTTGACGGAGTCCACCGGAATTGGGGCGTCCACCGATTCTCTGGAGGAGAGCCGCCGGTACGGCACGGCGGGGCTTCTTTCGCCGAGCACCGAGGGGATGATTGTTGACCCGGAAACCGGCGAGGCTTTGCCCGTGAACCGGACCGGGGAGCTTTGGCTCCGAGGGCCCACCATAATGAAAGGGTATTTCGGTAATGTGGAGGCCACAGCCTCAACACTTGACTCGGAGGGGTGGCTGAGAACTGGTGATCTGTGTTATATCGATGAAGATGGTTTTATTTTTGTGGTGGATAGGCTTAAAGAACTCATCAAATATAAGGGTTATCAGGTGCCTCCTGCAGAATTAGAGGCGCTGTTACTCACACATCCTAATATCTCTGATGCAGCTGTGATTCCGTAA 1431 52.27 MAVHGGEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWESVDSVAASLSDMGIRKGHVILLLSPNSIFFPIICLAVMSIGAIITTTNPLNTPQEIAKQIADSKPILAFTTQQLIPKIASSKLPIVLIDGQIQNSPVKIVSTLNEMMRKKPSGSRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYRATYLPLVPPILVALVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVSILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTIMKGYFGNVEATASTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIP 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116309724 116318318 - Tan0005369.2 Tan01g5084 742508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5084 476 Pfam AMP-binding enzyme 47 407 IPR000873 -
Tan01g5084 476 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Tan01g5084 476 CDD 4CL 30 476 - -
Tan01g5084 476 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 444 - -
Tan01g5084 476 Gene3D - 445 476 IPR045851 -
Tan01g5084 476 SUPERFAMILY Acetyl-CoA synthetase-like 44 476 - -
Tan01g5084 476 Gene3D - 18 444 IPR042099 -
Tan01g5084 476 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 476 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5084 Tan-Chr1:116309724 Tan05g2932 Tan-Chr5:81528263 7.00E-110 dispersed
Tan01g5083 Tan-Chr1:116309724 Tan01g5084 Tan-Chr1:116309724 1.40E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5084 K10526 - csv:101221396 870.922