Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5103 ATGGCTGGATCAGATGAGAACAACCCGGGTGTGATCGGACGAGCAAATCTTCATGGGAGTTTACGAGTTGGTGTTGGTGGCGGTGGCAAATTTGTTGTGGGGGCGTGTCAAAACCGCAGAGCTTTGAGCAACATTAATGGCAATGTTACAGCAGCAGCTCCTCCCCTTCATCCCTGTGCAGTCCTCAAAAGAGGCCTAACAGAAACTGATGCTGTTCACAACAATAAAAACAACGCCCCAATTCCGATTCATCGACCAATCACTCGGAAGTTTGCAGCTCAGCTGGCTAATAAGCAGAAGCAACCTGTGCCTCAGGTTGATAGAAAGCCACTGCAATCTGCTCCAACTCGAAAAGAGTCTTTAGATCATCATCCCATCATAGAGGAAGATGATTCCATGGGCGAATCAGCAGTACCAATGTTTGTGCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCAAGTCATGGACATAGACAGCCGCGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTACTACAGGAAAGCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAGCAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAGTTTGAGCTGATGGAGGAGACATTGTACCTGACAGTCAACCTGATCGATAGATTCTTGGCGGTTCAGTCGGTGGTGAGGAAGAAGCTCCAGCTTGTTGGAGTGACGGCCATGCTTATTGCCTGCAAGTATGAAGAAGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAGGCCTACAGCCGAAAAGAAGTTCTAGACATGGAGAAGTTGATGATCAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCCCAATCTGATAGAGAGCTGGACCTGCTCTCATTCTTCATGGTGGAGCTCTGTTTAGTGGAATATGAAATGCTGAAGTATAAACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGTACCATCAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCATACTGGGTATTCACAGGAACAGCTTCTGGAATGTTCACATTTGATGGTGGAGTTTCATCAGAAAGCAAGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGCACATCCAAGTTTGGATATGCTGCAAGAAGTGAGCCAGCAAACTTTTTGTTGGAAGAAAGGATATAG 1326 45.25 MAGSDENNPGVIGRANLHGSLRVGVGGGGKFVVGACQNRRALSNINGNVTAAAPPLHPCAVLKRGLTETDAVHNNKNNAPIPIHRPITRKFAAQLANKQKQPVPQVDRKPLQSAPTRKESLDHHPIIEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEQVMDIDSRDKKDQLAVVEYIDDLYAYYRKAEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYSRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYKPSLMAAAAVFTAQCTINGFKEWSKTSEWHTGYSQEQLLECSHLMVEFHQKARTGKLTGVHRKYCTSKFGYAARSEPANFLLEERI 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116409736 116413151 - Tan0004542.1 Tan01g5103 742527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5103 441 SUPERFAMILY Cyclin-like 315 434 IPR036915 -
Tan01g5103 441 CDD CYCLIN_AtCycB-like_rpt1 168 311 - -
Tan01g5103 441 SMART Cyclin_C_2 316 433 IPR004367 -
Tan01g5103 441 CDD CYCLIN_AtCycB-like_rpt2 316 432 - -
Tan01g5103 441 PANTHER CYCLINS 164 420 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan01g5103 441 Pfam Cyclin, N-terminal domain 188 314 IPR006671 -
Tan01g5103 441 PIRSF Cyclin_A_B_D_E 31 441 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan01g5103 441 ProSitePatterns Cyclins signature. 218 249 IPR048258 -
Tan01g5103 441 Gene3D - 188 427 - -
Tan01g5103 441 Gene3D - 202 314 - -
Tan01g5103 441 SMART cyclin_7 320 402 IPR013763 -
Tan01g5103 441 SMART cyclin_7 223 307 IPR013763 -
Tan01g5103 441 Pfam Cyclin, C-terminal domain 316 432 IPR004367 -
Tan01g5103 441 MobiDBLite consensus disorder prediction 95 123 - -
Tan01g5103 441 FunFam G2/mitotic-specific cyclin-1 303 428 - -
Tan01g5103 441 SUPERFAMILY Cyclin-like 178 313 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5103 Tan-Chr1:116409736 Tan03g2169 Tan-Chr3:76288302 2.10E-129 dispersed
Tan01g5103 Tan-Chr1:116409736 Tan01g3680 Tan-Chr1:101634757 4.30E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5103 K21777 - csv:101223199 767.689