Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5126 ATGGATCAGTTCGACGCATTCTTTAGGAGAGCCGATTTGGATGGCGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTTGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTCCTTGGTCGACCAGAATTTTATAATGCTCTCAGACTCGTTACTGTTGCTCAAACTAAGCGAGACCTAACGCCTGAAATTGTTAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATCCCCCCACCAAAGATTAATCTTCCAGCTGTATCTGCCCCTCAATCAACTTCAGTGCCTGTTGCATCTTCTCCACAGATGAGTATACCTGCACCAACGGCATCTCAAAATTTTGGCTTTAGAGGACAAGGGGTTCCAAATGTGGGTGTGAATCAGCAGTATATTTCGGCCCAACCAAACCCTTCCATGAGGTTACCTCAAGCCACACCTGGCGGTGTTGCTTCCAATAAGCAACTGGTTATTGCTGCTTCCGAGCCCTCTGGAGAAGGAAACGTACTGGGTTCAAATCTTCCAAACCCAAACGATTGGCTCAGTGGAAGGCCAGGTGGCGCCCCTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCAGTGCCTTCCCCAGCTACATCCTTATCATCAGCTTTAGTGCCTTCACAGCCTATGCCTAATGATAGAGCACCAGCTGTTACTGGTAATGGATTTACTTCTAAGTCGGCATTTGGTGCTGACATGTTTTCTGTTACTCCATCACCACATATGCCAGGTTCTTCCGGACTCAACAATGCAGCTAATAATAGTATTGGTCCATCAGCCATTGTTCCAGTTTCCAGTGTATCCCAACCTTTAAGCAAGCACAACTCAATGGAGTCATTGCAGAGTGCATTTGTTTCAAGGCCATTATCTGGTGCGCCATTTCAGCTCTCTCAGTCATCACTGGAACCTAGCAAGGAGGTTAGAGCAACAGGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCTAGGAACTCCACTTCTGAAAATGCACAGGTTACTTGGCCAAAGATGAAACCCACTGATGTTCAGAAATACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGATGGTAGAATTACCGGTGAGCAGGCACGGAATCTATTTTTAAGTTGGAGGTTACCGAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCCGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGACCTCTTCCACCCGTGCTTCCAAATAATGTTATGTTTGATGAGACTCTGTTGTCTATGACAGGACAATCTAACATTGTCCATCCAAATGCAACTTGGGGTCCTCGTCCTGGATTTGGACAGCAGCCACCCCAGGTCACTGCTCGGTCAGTGGCACCAACTGCAGGATTGAGGCCCCAAACAAATATACTTGCTTCAAAGGCTGATGGCGCTAGACTATCCAATGAGCAGAAATCAAGGGCTCCAGTGTTGGAGGATTCATTTCTGGACCAATCTGACAAGAGCCAACAGATTTCGGCTAGCTCAAATGCTCAAGATGCTGCAACATCAGAGAACAAGGTTGGAGAGACCGCGGATGTTATTTTGGATTCAAAAGAAAAGATTGAATTCTATCGCACAATGATGCAGGAACTTGTTCTACATAAAAGCAGATGTGATAATAGATTAAATGAGATCACAGAAAGGGCATCTGCTGACAAGCGTGAGTCGGAATCTTTGGGGAAAAAATACGAGGAGAAGTACAAGCAAGTGGCTGAAATAGCATCTAAGTTAACCATTGAAGAAGCAAAACATCGTGATGTTCAAGAAAGGAAGACAGAGTTGCATCAAGCAATTATCAAAATGGAACAAGGAGGAAGCGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTTGATGTTAAGTCGGCAGCCATAATCGAACTTCCAGTAGGTTGGCAACCTGGAATTCCGGATGATGCAGCTATTTGGGATGAAGAGTGGGATAAGTTTGAAGATGAAGGATTTTCCAATGATCTTAATCTCGATCCAAAAGGTGTTTCTGCCTCGAAACCAAAAATGTCAGACAGTCAGGGTGAAAAGGATCTAGCAGATTATAACTCAACTCCTGATTCATCGTCAAATGCCAATGGAAAAGTGGGGAACTCCTCAAGTACCATCAATCGTGCCTTTGAGAGTGAATCTGTGTATAGCCACAGTGAAGATGAATCAGCAAGAAGTCCATATGGCAGTCCGGTTGCAAAGACATCTCTAGAAAGCCCTTCTCATGAATTTTCAGATGCTGGTTATGAAAAAAGTCCGCTTTCACATAGAGGTTTCAATGAGTCAGCTTGGGGCGCCTTTGACAATAATGATGACGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAACCAGACTCTGAAAAGCACAGCGATTTCTTTGGATCCAGTGATTTTGACACGAGCTCCATTAAAACAGCATCCCCGAATGCAGATAGCTTCTTTCAGAGAAAAAGCCCATTTTTTGAGGATTCTGTCCCTCCCACTCCTCTCTCTCGATTTGGCAGCTCTTCCCCTCGTTATAGCGATGTTGGGGAACACTTCTTCGACAATTCCTCCAGGTTTGATTCTTTCAGTATCCAGGATGATGGTAGTTTCTCCCCTCAACGTGTGAAGTTCAGCAAAGAGAAGTTTTCAAGGTTTGATTCTATCGGTAGTAGCATGGACTTCGGTCAGAGTAGCCAGAGGCACGCCAGATTTGATTCCATTGGCAGCGTCAGGTTCGATGATGCAGACCCATATGGGGCTAGAGATGGAGATCATGTAAACGCATTTGGGTCCTATGACTCGTTTAGAGTCTCATCAGAGAATCAAAGTCCGAAGAAAAGTCCTGATAGTTGGAGAGCTTTCTAA 3042 44.81 MDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLPKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQTKRDLTPEIVKAALYGPAAAKIPPPKINLPAVSAPQSTSVPVASSPQMSIPAPTASQNFGFRGQGVPNVGVNQQYISAQPNPSMRLPQATPGGVASNKQLVIAASEPSGEGNVLGSNLPNPNDWLSGRPGGAPAAGPRGVSPSVPSPATSLSSALVPSQPMPNDRAPAVTGNGFTSKSAFGADMFSVTPSPHMPGSSGLNNAANNSIGPSAIVPVSSVSQPLSKHNSMESLQSAFVSRPLSGAPFQLSQSSLEPSKEVRATGPSPLISSGITTGARNSTSENAQVTWPKMKPTDVQKYTKVFMEVDTDRDGRITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPPVLPNNVMFDETLLSMTGQSNIVHPNATWGPRPGFGQQPPQVTARSVAPTAGLRPQTNILASKADGARLSNEQKSRAPVLEDSFLDQSDKSQQISASSNAQDAATSENKVGETADVILDSKEKIEFYRTMMQELVLHKSRCDNRLNEITERASADKRESESLGKKYEEKYKQVAEIASKLTIEEAKHRDVQERKTELHQAIIKMEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGIPDDAAIWDEEWDKFEDEGFSNDLNLDPKGVSASKPKMSDSQGEKDLADYNSTPDSSSNANGKVGNSSSTINRAFESESVYSHSEDESARSPYGSPVAKTSLESPSHEFSDAGYEKSPLSHRGFNESAWGAFDNNDDVDSVWGIKPVNTKEPDSEKHSDFFGSSDFDTSSIKTASPNADSFFQRKSPFFEDSVPPTPLSRFGSSSPRYSDVGEHFFDNSSRFDSFSIQDDGSFSPQRVKFSKEKFSRFDSIGSSMDFGQSSQRHARFDSIGSVRFDDADPYGARDGDHVNAFGSYDSFRVSSENQSPKKSPDSWRAF 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116595125 116618589 + Tan0004442.1 Tan01g5126 742550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5126 1013 Pfam Cytoskeletal-regulatory complex EF hand 357 428 IPR000261 GO:0005515(InterPro)
Tan01g5126 1013 MobiDBLite consensus disorder prediction 212 228 - -
Tan01g5126 1013 SUPERFAMILY EF-hand 2 73 IPR011992 -
Tan01g5126 1013 MobiDBLite consensus disorder prediction 477 495 - -
Tan01g5126 1013 SMART efh_1 3 31 IPR002048 GO:0005509(InterPro)
Tan01g5126 1013 SMART efh_1 400 428 IPR002048 GO:0005509(InterPro)
Tan01g5126 1013 SMART efh_1 37 65 IPR002048 GO:0005509(InterPro)
Tan01g5126 1013 SMART efh_1 366 394 IPR002048 GO:0005509(InterPro)
Tan01g5126 1013 MobiDBLite consensus disorder prediction 462 548 - -
Tan01g5126 1013 MobiDBLite consensus disorder prediction 741 774 - -
Tan01g5126 1013 MobiDBLite consensus disorder prediction 782 803 - -
Tan01g5126 1013 PANTHER EH DOMAIN 1 915 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Tan01g5126 1013 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515(InterPro)
Tan01g5126 1013 Gene3D - 357 446 - -
Tan01g5126 1013 MobiDBLite consensus disorder prediction 523 546 - -
Tan01g5126 1013 MobiDBLite consensus disorder prediction 714 813 - -
Tan01g5126 1013 CDD EH 367 433 IPR000261 GO:0005515(InterPro)
Tan01g5126 1013 SMART eh_3 356 451 IPR000261 GO:0005515(InterPro)
Tan01g5126 1013 SMART eh_3 2 88 IPR000261 GO:0005515(InterPro)
Tan01g5126 1013 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509(InterPro)
Tan01g5126 1013 MobiDBLite consensus disorder prediction 334 354 - -
Tan01g5126 1013 MobiDBLite consensus disorder prediction 175 232 - -
Tan01g5126 1013 Gene3D - 1 96 - -
Tan01g5126 1013 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509(InterPro)
Tan01g5126 1013 Pfam EF hand 5 23 IPR002048 GO:0005509(InterPro)
Tan01g5126 1013 ProSiteProfiles EH domain profile. 363 446 IPR000261 GO:0005515(InterPro)
Tan01g5126 1013 CDD EH 4 70 IPR000261 GO:0005515(InterPro)
Tan01g5126 1013 MobiDBLite consensus disorder prediction 315 354 - -
Tan01g5126 1013 SUPERFAMILY EF-hand 351 446 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5126 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2875 Tan-Chr5:81082916 Tan01g5126 Tan-Chr1:116595125 1.00E-11 transposed
Tan01g5126 Tan-Chr1:116595125 Tan02g0572 Tan-Chr2:5043252 1.00E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36