Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5130 ATGAGTTTCATTTGGCTTCTTTCGTTGCTCTCTCTCTCTTGTGGAATTTTACCTCTTGGGTTTGGTCAGAACATCTCCTCAAGACCGTCGGTTGTGAACATTGGAGCTATTTTCTCTTTTGATTCTACCATTGGAAAAGCTGCCAAGATTGCCATTGAAGAAGCTGTGAAAGATGTGAACGCGGATCCCACCATTCTTCCCGGAACCAAGCTTTGGTTACAAGTGCAAAATTCCAACTGTAGTGGGTTTTTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACAGATCCTACTCTCTCCGCCCTTCAGTTTCCCTTCTTTGTGAGGGCTGCACACAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTGTTGAGTACTATGGTTGGAAAGAGGTTATTGCTATATATGTCGACGATGATTATGGGTGGAGTGGCATTGCAACATTGGGTGATAAACTTGCTGAAAAGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCTAGAATCTTCGGGAAATCGAACCCAAGTTATGGATCAACTTGTTAAGGTTGCACTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGGGCTTTAGTCTTTTCACTGGCTAAATCCCTTCAAATGATGGGCAATGGATATGTATGGATAACAACTGATTGGCTTTCGTCTCTATTAGATAGTGTCGTTCCTCCCCCTCCTGAGACCTTAGACTCGGTGCAAGGAGTTCTTTCTTTACGCCAGCACACAGCAGAGTCAGATAAAAAGAAAGCTTTTCTTTCCAGGTGGAATAAGTTAACTGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTATATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCGTTGACAAATTTTTTAATCAAGGTGGGGCTGTTACGCATTCTAAGGATTCCAGGCTGAATTCCAGTGAAAGCGGTGGTCTTCATCTTGAAGCTATGACCATCTTTGATGGTGGAAATCATCTGCTGAATAACATATTGGAGAGTGACTTTGTTGGTTTGACTGGTGCCATTAAGTTTGATTCTGATAGATCCCTTGTCCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTTGGTTACTGGTCCAACTATTCTGGTCTATCAATTGATGCTCCTGAGACACTTTATTCCAAACCACCTAATCGTTCACACGCAAATCAGAAGCTGTATGAGGTTATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTACTAAACATTGGAGTGCCACTTCGGGCCAGTTTCAAGGAGTTTGTAGCACAAACCAAAGGGACTGAAAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAACTTATTACCTTATGCTGTCCCACACCAATTTATTGCCTTTGGCGATGGCCATCAGAATCCAAATTACACAGATCTTGTGTATAGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATTGCCATTGTCACAAGCCGTACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGTGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACTGCTGGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCCGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTCGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATTATAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTTCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAAGTGATGAACGGATAGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTCAACATATCTAGATCTAGGCTTGTTCCTCTTGGAACACCGGAAGCATATGCCAAGGCACTTGATCTTGGCCCAGACAAGGAGGGAGGTGTTGCTGCTATAGTTGATGAACTTCTATATATAGAAAGTTTCCTCTCTAGACAGTGTACATTCAGAGTTGTTGGTCAAGAGTTCACGAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGACTCTCCATTGGCTATAGATATGTCGACTGCCATTTTGCAGCTATCAGAGAATGGTGATCTACAACGGATTCATGACAAATGGCTAGTGAAAAGCGCCTGCAGCTTGGACAGTACAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTCTTTCTGATCTGTGGGATAGTGTGTTTCATTGCCCTTGCCATATACTGCTTTCAGATTACTCGTCAGCTATACCATTCTGATTCAAAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAATCGTCTTCGACGAATTATATCGCTGTTGGATGAGAAGAAAGAACCAAGGGAAAGCAAACGAAGGAAAGTGGAGAAATCATCTGAAAATGATAAGAACGATGATAATTTGGAGGTAAATCCTTGA 2751 42.6 MSFIWLLSLLSLSCGILPLGFGQNISSRPSVVNIGAIFSFDSTIGKAAKIAIEEAVKDVNADPTILPGTKLWLQVQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAHSDLFQMTAVAEIVEYYGWKEVIAIYVDDDYGWSGIATLGDKLAEKRCKITYKVGISLESSGNRTQVMDQLVKVALMESRVMVLHVNPKLGALVFSLAKSLQMMGNGYVWITTDWLSSLLDSVVPPPPETLDSVQGVLSLRQHTAESDKKKAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAVDKFFNQGGAVTHSKDSRLNSSESGGLHLEAMTIFDGGNHLLNNILESDFVGLTGAIKFDSDRSLVHPAYDIINVIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLNIGVPLRASFKEFVAQTKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHQNPNYTDLVYRITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTAGFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPITGIETLRESDERIGFQVGSFAERYLSEELNISRSRLVPLGTPEAYAKALDLGPDKEGGVAAIVDELLYIESFLSRQCTFRVVGQEFTKSGWGFAFPRDSPLAIDMSTAILQLSENGDLQRIHDKWLVKSACSLDSTELESDRLQLKSFWGLFLICGIVCFIALAIYCFQITRQLYHSDSKESDLSSSSGSHSNRLRRIISLLDEKKEPRESKRRKVEKSSENDKNDDNLEVNP 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116637833 116641666 + Tan0015513.1 Tan01g5130 742554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5130 916 Gene3D - 578 713 - -
Tan01g5130 916 MobiDBLite consensus disorder prediction 880 916 - -
Tan01g5130 916 FunFam Glutamate receptor 463 579 - -
Tan01g5130 916 Gene3D - 739 774 - -
Tan01g5130 916 SMART GluR_14 469 811 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan01g5130 916 FunFam Glutamate receptor 579 709 - -
Tan01g5130 916 PIRSF IGluLR_plant 1 915 IPR017103 -
Tan01g5130 916 Gene3D - 775 808 - -
Tan01g5130 916 MobiDBLite consensus disorder prediction 865 916 - -
Tan01g5130 916 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Tan01g5130 916 CDD GluR_Plant 466 809 - -
Tan01g5130 916 Gene3D - 459 577 - -
Tan01g5130 916 FunFam Glutamate receptor 705 813 - -
Tan01g5130 916 Pfam Bacterial extracellular solute-binding proteins, family 3 479 588 IPR001638 -
Tan01g5130 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 890 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan01g5130 916 Pfam Receptor family ligand binding region 49 406 IPR001828 -
Tan01g5130 916 Gene3D - 147 421 - -
Tan01g5130 916 Pfam Ligand-gated ion channel 810 841 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan01g5130 916 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Tan01g5130 916 FunFam Glutamate receptor 147 302 - -
Tan01g5130 916 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Tan01g5130 916 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Tan01g5130 916 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 319 331 - -
Tan01g5130 916 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Tan01g5130 916 Gene3D - 50 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5130 Tan-Chr1:116637833 Tan05g0868 Tan-Chr5:6890518 5.00E-290 dispersed
Tan03g2176 Tan-Chr3:76350376 Tan01g5130 Tan-Chr1:116637833 0.00E+00 transposed
Tan09g1644 Tan-Chr9:68080492 Tan01g5130 Tan-Chr1:116637833 8.10E-126 transposed
Tan01g5130 Tan-Chr1:116637833 Tan02g0563 Tan-Chr2:4991829 2.90E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5130 K05387 - csv:101204862 1588.93