Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g5135 | ATGCGTCCCTTTAGGTACCTCGCCGGTGTGAACTCCTCCGCCATCTCCGACACGGTGGAGCCCGATAGGTATGATTCCGATTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATATGCGTTCTCGGTCTCGTTGCTGTTGCCCGATGCGCCTGGCTACGCCACCTCGCCGGCGATAATGGTGGCTCTGCTTCCACTCGTCCTCCTCCGCCTCCTGTCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACTGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGCGTGCTGCCTCAGTGCGGCCATGGATTTCACGTGTCCTGCATCGACACATGGTTCCGATCTCACTCCTCCTGTCCTTCGTGCCGTCAGATTCTTGTGGTAAGTCAGTGCCAAAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAGCGGTGGGACCGAATCCAGAGTAAAAGAGGAAGGAGAAGATAAGACGAATAGGTTCTTACCTTAG | 561 | 55.61 | MRPFRYLAGVNSSAISDTVEPDRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDNGGSASTRPPPPPVSNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSSGGTESRVKEEGEDKTNRFLP | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 116655370 | 116656675 | + | Tan0004247.1 | Tan01g5135 | 742559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g5135 | 186 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 149 | IPR013083 | - | |
Tan01g5135 | 186 | SMART | ring_2 | 103 | 144 | IPR001841 | - | |
Tan01g5135 | 186 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
Tan01g5135 | 186 | MobiDBLite | consensus disorder prediction | 158 | 186 | - | - | |
Tan01g5135 | 186 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Tan01g5135 | 186 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 20 | 171 | IPR052788 | - | |
Tan01g5135 | 186 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Tan01g5135 | 186 | SUPERFAMILY | RING/U-box | 83 | 151 | - | - | |
Tan01g5135 | 186 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g5135 | Tan-Chr1:116655370 | Tan08g2273 | Tan-Chr8:74213920 | 1.10E-47 | dispersed | |
Tan01g5135 | Tan-Chr1:116655370 | Tan08g2229 | Tan-Chr8:73899418 | 8.70E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g5135 | - | - | - | 0.0 |