Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5135 ATGCGTCCCTTTAGGTACCTCGCCGGTGTGAACTCCTCCGCCATCTCCGACACGGTGGAGCCCGATAGGTATGATTCCGATTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATATGCGTTCTCGGTCTCGTTGCTGTTGCCCGATGCGCCTGGCTACGCCACCTCGCCGGCGATAATGGTGGCTCTGCTTCCACTCGTCCTCCTCCGCCTCCTGTCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACTGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGCGTGCTGCCTCAGTGCGGCCATGGATTTCACGTGTCCTGCATCGACACATGGTTCCGATCTCACTCCTCCTGTCCTTCGTGCCGTCAGATTCTTGTGGTAAGTCAGTGCCAAAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAGCGGTGGGACCGAATCCAGAGTAAAAGAGGAAGGAGAAGATAAGACGAATAGGTTCTTACCTTAG 561 55.61 MRPFRYLAGVNSSAISDTVEPDRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDNGGSASTRPPPPPVSNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSSGGTESRVKEEGEDKTNRFLP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116655370 116656675 + Tan0004247.1 Tan01g5135 742559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5135 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Tan01g5135 186 SMART ring_2 103 144 IPR001841 -
Tan01g5135 186 CDD RING-H2_EL5-like 102 145 - -
Tan01g5135 186 MobiDBLite consensus disorder prediction 158 186 - -
Tan01g5135 186 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Tan01g5135 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 171 IPR052788 -
Tan01g5135 186 Pfam Ring finger domain 102 145 IPR001841 -
Tan01g5135 186 SUPERFAMILY RING/U-box 83 151 - -
Tan01g5135 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5135 Tan-Chr1:116655370 Tan08g2273 Tan-Chr8:74213920 1.10E-47 dispersed
Tan01g5135 Tan-Chr1:116655370 Tan08g2229 Tan-Chr8:73899418 8.70E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5135 - - - 0.0