Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5155 ATGTCGGGATCTGAGACCGGAGTGATGACCAGCGGCGAACCCTTCTCCATCGGTCTCCAGAAGAGTCCAGTACAGTCACAGCAGCCAGTCTTGCAGGGCATGCATTTACCCTTCGGCGCCGACGGCGTCTACAAGCCCGTCGCCGCCGCCTCGCCCACCTACCAATCCTCCGGCGTCGGAGTTGCTGGCAATGCCGGTTCCGATGTATCAGCTTTCGTTAACATGAATACGCAAAGCGAGCCAGTAAAGAGGAAGAGAGGGAGACCTAGGAAGTATGGGCCAGATGGCAGTATGGCAATGGTTCCTGCAGTCCCCTCCGCCGCCGCAACTCAGTCAAGTGGAGGTTTTTCTCCTCCACCCACCGCCGCCCCTCCGTCGGGAGGATCAGCCTCTCCAACTTCTTTGAAGAAAGCAAGAGGCAGACCCCCTGGCTCTAGCAAAAAGCAGCAGTTGGATGCTTTGGGGTCAGCAGGAATTGGGTTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTATGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACACTACGTCAACCAGCCATGTCAGGTGGAACTGTGACTTATGAGGGGCGATTCGAGCTTTTGTCACTATCTGGGTCGTATCTCCTCTCCGAGAATGGCGGTCAGCGGAGCCGAACTGGGGGGCTAAGTGTTTCATTGTCTGGACCAGATGGTAGAGTCTTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCCTCTCCTGTTCAGGTGGTGGTGGGGAGCTTCGTCGCCGATGTGGGGCATAATGAATTGAAACAAGCAAACCATATAGAACAGCAGCCTGTTACTGCACCACATAAACTTGCTCCGATCCGTGCTGGGATGGCGGGGGCGAGCAGTCCGCAATCACGTGGAACTCTCAGTGAATCCTCGGGAGGGCCAGGGAGTCCGTTTAATCAGAGTGCTGGAGCCTGCAATAACACCATATCTTGGAAGTGA 1041 54.37 MSGSETGVMTSGEPFSIGLQKSPVQSQQPVLQGMHLPFGADGVYKPVAAASPTYQSSGVGVAGNAGSDVSAFVNMNTQSEPVKRKRGRPRKYGPDGSMAMVPAVPSAAATQSSGGFSPPPTAAPPSGGSASPTSLKKARGRPPGSSKKQQLDALGSAGIGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFELLSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVADVGHNELKQANHIEQQPVTAPHKLAPIRAGMAGASSPQSRGTLSESSGGPGSPFNQSAGACNNTISWK 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116716138 116718761 - Tan0004523.1 Tan01g5155 742579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5155 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 331 IPR039605 GO:0003680(InterPro)
Tan01g5155 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 284 - -
Tan01g5155 346 FunFam AT-hook motif nuclear-localized protein 1-like 163 294 - -
Tan01g5155 346 CDD DUF296 162 276 IPR005175 -
Tan01g5155 346 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Tan01g5155 346 SMART AT_hook_2 136 148 IPR017956 GO:0003677(InterPro)
Tan01g5155 346 Gene3D - 163 294 - -
Tan01g5155 346 MobiDBLite consensus disorder prediction 309 346 - -
Tan01g5155 346 MobiDBLite consensus disorder prediction 1 28 - -
Tan01g5155 346 MobiDBLite consensus disorder prediction 313 346 - -
Tan01g5155 346 ProSiteProfiles PPC domain profile profile. 157 297 IPR005175 -
Tan01g5155 346 MobiDBLite consensus disorder prediction 75 150 - -
Tan01g5155 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 277 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2760 Tan-Chr1:50275909 Tan01g5155 Tan-Chr1:116716138 9.10E-102 dispersed
Tan01g2761 Tan-Chr1:50275909 Tan01g5155 Tan-Chr1:116716138 9.10E-102 dispersed
Tan01g5155 Tan-Chr1:116716138 Tan06g2054 Tan-Chr6:66875193 8.80E-62 dispersed
Tan01g5155 Tan-Chr1:116716138 Tan07g1762 Tan-Chr7:69191597 9.40E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5155 - - - 0.0