Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5156 ATGGAGAAGGGGCCGATCACTGTTTCAGCCATGGAGGCATTCGAGAAGCTGGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTACAGGGCAAGGGAGAAGGCGACCGGCAAGATTGTAGCGCTCAAGAAGACGCGCCTCCATGAGGACGAGGAAGGTGTTCCTCCCACTACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCTCATATTGTTAGGTTGATGGATGTCAAGCAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAAAAATTCATCAAGAGTTTCCGTCATACGGGAGAAAGCATTCCCGTCAACACTGTCAAGAGTTTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCTTGCACAGGGACCTGAAACCGCACAATCTCTTGATGGACCGAAAGACCATGATGCTCAAAATTGCAGACCTTGGTCTTGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGATACTGACCCTCTGGTATAGAGCTCCCGAAGTTCTGTTGGGAGCTACTCATTACTCCACAGCTGTGGATATGTGGTCTGTTGGCTGCATATTCGCCGAACTGGCCACCAAGCAGGCGCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAAGTTTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAGTATCCCCAGTGGAACCCCCAAAACCTTTCAACAGCCGTCCCCAACTTGGATGATAAAGGCCTAGATCTGCTTTCACAAATGTTGAAGTATGAACCTTCAACGCGTATTTCAGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGCATATCTCTGA 939 46.96 MEKGPITVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRHTGESIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWNPQNLSTAVPNLDDKGLDLLSQMLKYEPSTRISAKKAMEHPYFDDLNKAYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116724088 116726078 + Tan0014488.1 Tan01g5156 742580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5156 312 PANTHER CELL DIVISION PROTEIN KINASE 14 304 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Tan01g5156 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Tan01g5156 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g5156 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Tan01g5156 312 SMART serkin_6 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g5156 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Tan01g5156 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g5156 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Tan01g5156 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g5156 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Tan01g5156 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5156 Tan-Chr1:116724088 Tan03g0660 Tan-Chr3:62119840 3.30E-124 dispersed
Tan03g1653 Tan-Chr3:72630428 Tan01g5156 Tan-Chr1:116724088 1.90E-30 dispersed
Tan03g1654 Tan-Chr3:72630428 Tan01g5156 Tan-Chr1:116724088 1.30E-30 dispersed
Tan11g2117 Tan-Chr11:50234928 Tan01g5156 Tan-Chr1:116724088 6.90E-37 dispersed
Tan01g5156 Tan-Chr1:116724088 Tan02g2173 Tan-Chr2:91072459 3.10E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67160 PF00069 Pkinase 5.70E-72 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5156 K07760 - csv:101208001 622.083