Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5166 ATGAATGCTAGCGATAGGGCAGGGCAGGATTTGCCCCACGACCAAGTTCGAGTTCAAGTTCAGGAGCTAGAATCTGCACCGCCAAAGGAGGAACATAACCTCAAAGAAGACGGGCAATTAGCCTGCCCAACGTTTAACGACGTTAAATTTCACGAACTTCCTTGCCTTCAAAAATCGATTGAGGACCATCAGGATTTTCCTGATCAACCTGTCGTTGTCGTTGGGACTACTGCTGATGCAAAAGTTTTCGAGGTTGCTCTTGATGAACAGCCTGAAAGTAAAGAAAATGCCATGGAGACTGATCCCCAAATTGGGAACGAAGATGATCCTTCTGCATCTTCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGCCACACCCGTGAAGAATGCATGGACTGATATTGAAATGGCTGAGGCTGACGAGTCAGGGACACCAGAGGATAGGGTAGCATTTATGAAGGAGATTGAGACTTTCCACAGGGAGAGGGCTTTAGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTCAATTGTCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAGTTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTTTATGAGAAGGCACTTTTAGAATATGAAAAGCATCAAAAGCTAACTGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACTGAAAAGGAGACTGGCTACTATCAAGCTGCTGGCTCAGGTAGGGCCCGGAGAGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAGAACCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAATGCAGAGCACACTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAAGGGTTATGGATGTCGGACCTCCAGCTGATTGGGTGAAAATTAATGTGCGTGAGATGAAGGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCGGATCCATCTGGACGTGTGGTAATTAGTGGTGAACCTGAGCAGGTGGATAATCCTTGGGGAATCACACCCTTTAAAAAGGTGGTGAGGTTACCGACAAGAATAGATCCTCTTCAGACATCTGCGGTGGTGAGCCTTCATGGTCGACTTTTCGTGCGAGTCCCTTTTGAGCAAGGATCCATGTGA 1353 46.27 MNASDRAGQDLPHDQVRVQVQELESAPPKEEHNLKEDGQLACPTFNDVKFHELPCLQKSIEDHQDFPDQPVVVVGTTADAKVFEVALDEQPESKENAMETDPQIGNEDDPSASSISPEISLPSNAENQSATPVKNAWTDIEMAEADESGTPEDRVAFMKEIETFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHQKLTGELQLPVGSLPQSTNTEKETGYYQAAGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNAEHTGRDADFESDKQVMTRVMDVGPPADWVKINVREMKDCFEVYALVPGLLREEVRVQSDPSGRVVISGEPEQVDNPWGITPFKKVVRLPTRIDPLQTSAVVSLHGRLFVRVPFEQGSM 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116741878 116747098 + Tan0018321.1 Tan01g5166 742590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5166 450 FunFam AT-rich interactive domain-containing protein 3 151 250 - -
Tan01g5166 450 MobiDBLite consensus disorder prediction 106 131 - -
Tan01g5166 450 MobiDBLite consensus disorder prediction 89 131 - -
Tan01g5166 450 Pfam ARID/BRIGHT DNA binding domain 154 238 IPR001606 GO:0003677(InterPro)
Tan01g5166 450 Gene3D - 152 249 IPR036431 GO:0003677(InterPro)
Tan01g5166 450 SMART bright_3 152 243 IPR001606 GO:0003677(InterPro)
Tan01g5166 450 CDD ACD_sHsps-like 364 444 - -
Tan01g5166 450 SMART ARID_2 148 238 - -
Tan01g5166 450 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 349 450 IPR002068 -
Tan01g5166 450 Gene3D - 339 449 IPR008978 -
Tan01g5166 450 FunFam AT-rich interactive domain-containing protein 3 341 449 - -
Tan01g5166 450 SUPERFAMILY HSP20-like chaperones 357 445 IPR008978 -
Tan01g5166 450 ProSiteProfiles ARID domain profile. 151 242 IPR001606 GO:0003677(InterPro)
Tan01g5166 450 Pfam Hsp20/alpha crystallin family 366 446 IPR002068 -
Tan01g5166 450 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 37 447 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Tan01g5166 450 SUPERFAMILY ARID-like 149 245 IPR036431 GO:0003677(InterPro)
Tan01g5166 450 CDD ARID 153 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5166 Tan-Chr1:116741878 Tan11g1966 Tan-Chr11:33339943 2.50E-117 dispersed
Tan01g5166 Tan-Chr1:116741878 Tan01g5167 Tan-Chr1:116741878 1.80E-224 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26624 PF00011 HSP20 1.50E-05 CL0190 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5166 - - - 0.0