Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g5166 | ATGAATGCTAGCGATAGGGCAGGGCAGGATTTGCCCCACGACCAAGTTCGAGTTCAAGTTCAGGAGCTAGAATCTGCACCGCCAAAGGAGGAACATAACCTCAAAGAAGACGGGCAATTAGCCTGCCCAACGTTTAACGACGTTAAATTTCACGAACTTCCTTGCCTTCAAAAATCGATTGAGGACCATCAGGATTTTCCTGATCAACCTGTCGTTGTCGTTGGGACTACTGCTGATGCAAAAGTTTTCGAGGTTGCTCTTGATGAACAGCCTGAAAGTAAAGAAAATGCCATGGAGACTGATCCCCAAATTGGGAACGAAGATGATCCTTCTGCATCTTCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGCCACACCCGTGAAGAATGCATGGACTGATATTGAAATGGCTGAGGCTGACGAGTCAGGGACACCAGAGGATAGGGTAGCATTTATGAAGGAGATTGAGACTTTCCACAGGGAGAGGGCTTTAGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTCAATTGTCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAGTTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTTTATGAGAAGGCACTTTTAGAATATGAAAAGCATCAAAAGCTAACTGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACTGAAAAGGAGACTGGCTACTATCAAGCTGCTGGCTCAGGTAGGGCCCGGAGAGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAGAACCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAATGCAGAGCACACTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAAGGGTTATGGATGTCGGACCTCCAGCTGATTGGGTGAAAATTAATGTGCGTGAGATGAAGGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCGGATCCATCTGGACGTGTGGTAATTAGTGGTGAACCTGAGCAGGTGGATAATCCTTGGGGAATCACACCCTTTAAAAAGGTGGTGAGGTTACCGACAAGAATAGATCCTCTTCAGACATCTGCGGTGGTGAGCCTTCATGGTCGACTTTTCGTGCGAGTCCCTTTTGAGCAAGGATCCATGTGA | 1353 | 46.27 | MNASDRAGQDLPHDQVRVQVQELESAPPKEEHNLKEDGQLACPTFNDVKFHELPCLQKSIEDHQDFPDQPVVVVGTTADAKVFEVALDEQPESKENAMETDPQIGNEDDPSASSISPEISLPSNAENQSATPVKNAWTDIEMAEADESGTPEDRVAFMKEIETFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHQKLTGELQLPVGSLPQSTNTEKETGYYQAAGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNAEHTGRDADFESDKQVMTRVMDVGPPADWVKINVREMKDCFEVYALVPGLLREEVRVQSDPSGRVVISGEPEQVDNPWGITPFKKVVRLPTRIDPLQTSAVVSLHGRLFVRVPFEQGSM | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 116741878 | 116747098 | + | Tan0018321.1 | Tan01g5166 | 742590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g5166 | 450 | FunFam | AT-rich interactive domain-containing protein 3 | 151 | 250 | - | - | |
Tan01g5166 | 450 | MobiDBLite | consensus disorder prediction | 106 | 131 | - | - | |
Tan01g5166 | 450 | MobiDBLite | consensus disorder prediction | 89 | 131 | - | - | |
Tan01g5166 | 450 | Pfam | ARID/BRIGHT DNA binding domain | 154 | 238 | IPR001606 | GO:0003677(InterPro) | |
Tan01g5166 | 450 | Gene3D | - | 152 | 249 | IPR036431 | GO:0003677(InterPro) | |
Tan01g5166 | 450 | SMART | bright_3 | 152 | 243 | IPR001606 | GO:0003677(InterPro) | |
Tan01g5166 | 450 | CDD | ACD_sHsps-like | 364 | 444 | - | - | |
Tan01g5166 | 450 | SMART | ARID_2 | 148 | 238 | - | - | |
Tan01g5166 | 450 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 349 | 450 | IPR002068 | - | |
Tan01g5166 | 450 | Gene3D | - | 339 | 449 | IPR008978 | - | |
Tan01g5166 | 450 | FunFam | AT-rich interactive domain-containing protein 3 | 341 | 449 | - | - | |
Tan01g5166 | 450 | SUPERFAMILY | HSP20-like chaperones | 357 | 445 | IPR008978 | - | |
Tan01g5166 | 450 | ProSiteProfiles | ARID domain profile. | 151 | 242 | IPR001606 | GO:0003677(InterPro) | |
Tan01g5166 | 450 | Pfam | Hsp20/alpha crystallin family | 366 | 446 | IPR002068 | - | |
Tan01g5166 | 450 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 37 | 447 | IPR045147 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER) | |
Tan01g5166 | 450 | SUPERFAMILY | ARID-like | 149 | 245 | IPR036431 | GO:0003677(InterPro) | |
Tan01g5166 | 450 | CDD | ARID | 153 | 238 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g5166 | Tan-Chr1:116741878 | Tan11g1966 | Tan-Chr11:33339943 | 2.50E-117 | dispersed | |
Tan01g5166 | Tan-Chr1:116741878 | Tan01g5167 | Tan-Chr1:116741878 | 1.80E-224 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26624 | PF00011 | HSP20 | 1.50E-05 | CL0190 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g5166 | - | - | - | 0.0 |