Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5167 ATGAATGCTAGCGATAGGGCAGGGCAGGATTTGCCCCACGACCAAGTTCGAGTTCAAGTTCAGGAGCTAGAATCTGCACCGCCAAAGGAGGAACATAACCTCAAAGAAGACGGGCAATTAGCCTGCCCAACGTTTAACGACGTTAAATTTCACGAACTTCCTTGCCTTCAAAAATCGATTGAGGACCATCAGGATTTTCCTGATCAACCTGTCGTTGTCGTTGGGACTACTGCTGATGCAAAAGTTTTCGAGGTTGCTCTTGATGAACAGCCTGAAAGTAAAGAAAATGCCATGGAGACTGATCCCCAAATTGGGAACGAAGATGATCCTTCTGCATCTTCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGCCACACCCGTGAAGAATGCATGGACTGATATTGAAATGGCTGAGGCTGACGAGTCAGGGACACCAGAGGATAGGGTAGCATTTATGAAGGAGATTGAGACTTTCCACAGGGAGAGGGCTTTAGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTCAATTGTCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAGTTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTTTATGAGAAGGCACTTTTAGAATATGAAAAGCATCAAAAGCTAACTGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACTGAAAAGGAGACTGGCTACTATCAAGCTGCTGGCTCAGGTAGGGCCCGGAGAGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAGAACCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAATGCAGAGCACACTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAAGGGTTATGGATGTCGGACCTCCAGCTGATTGGGTGAAAATTAATGTGCGTGAGATGAAGGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTTTACGAGAGGAGGTATTCTATTGTATTCACTATTCAGTCAGGAAACGAAACTCCTTTTTTTTTTTTAAATTTCTCTATTAA 1224 44.61 MNASDRAGQDLPHDQVRVQVQELESAPPKEEHNLKEDGQLACPTFNDVKFHELPCLQKSIEDHQDFPDQPVVVVGTTADAKVFEVALDEQPESKENAMETDPQIGNEDDPSASSISPEISLPSNAENQSATPVKNAWTDIEMAEADESGTPEDRVAFMKEIETFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHQKLTGELQLPVGSLPQSTNTEKETGYYQAAGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNAEHTGRDADFESDKQVMTRVMDVGPPADWVKINVREMKDCFEVYALVPGLLREEVFYCIHYSVRKRNSFFFFKFLY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116741878 116747098 + Tan0018321.2 Tan01g5167 742591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5167 407 MobiDBLite consensus disorder prediction 89 131 - -
Tan01g5167 407 MobiDBLite consensus disorder prediction 106 131 - -
Tan01g5167 407 ProSiteProfiles ARID domain profile. 151 242 IPR001606 GO:0003677(InterPro)
Tan01g5167 407 SUPERFAMILY ARID-like 149 245 IPR036431 GO:0003677(InterPro)
Tan01g5167 407 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 37 387 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Tan01g5167 407 Pfam ARID/BRIGHT DNA binding domain 154 238 IPR001606 GO:0003677(InterPro)
Tan01g5167 407 SMART bright_3 152 243 IPR001606 GO:0003677(InterPro)
Tan01g5167 407 Gene3D - 152 249 IPR036431 GO:0003677(InterPro)
Tan01g5167 407 CDD ARID 153 238 - -
Tan01g5167 407 SMART ARID_2 148 238 - -
Tan01g5167 407 FunFam AT-rich interactive domain-containing protein 3 151 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5167 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5167 Tan-Chr1:116741878 Tan11g1966 Tan-Chr11:33339943 2.30E-85 dispersed
Tan01g5166 Tan-Chr1:116741878 Tan01g5167 Tan-Chr1:116741878 1.80E-224 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2305 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2306 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2304 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2310 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2311 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2312 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan01g5166 . 121 417 ARID Transcription Factor Family AT1G20910 64.0 1.8e-103 373.6
Tan11g1966 . 209 480 ARID Transcription Factor Family AT1G20910 60.1 9.6e-89 324.7
Tan08g2268 . 194 491 ARID Transcription Factor Family AT1G20910 57.2 2.8e-88 323.2
Tan01g5167 . 121 386 ARID Transcription Factor Family AT1G20910 62.0 4.5e-86 315.8
Tan01g5063 . 16 309 ARID Transcription Factor Family AT1G76110 68.2 1.0e-110 397.5
Tan01g5166 . 138 447 ARID Transcription Factor Family AT1G76510 72.8 2.6e-127 453.0
Tan11g1966 . 188 510 ARID Transcription Factor Family AT1G76510 60.3 6.0e-108 388.7
Tan08g2268 . 180 512 ARID Transcription Factor Family AT1G76510 58.9 1.1e-106 384.4
Tan01g5167 . 138 386 ARID Transcription Factor Family AT1G76510 69.7 6.4e-94 342.0
Tan06g0070 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan06g0071 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan04g2843 . 2 741 ARID Transcription Factor Family AT3G43240 58.9 1.7e-248 856.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26625 PF01388 ARID 1.60E-16 CL0123 Tan TR