Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5169 ATGAAAATGGCAGGGTACAGCGAAGGAGGAGGATCAGCTTCACGCTACGTTCATCATCAACAACAACTTCTGAATCCGGAATTGCACCTGGACACTACTACTACTACTACTACTCCATCTAATTCCTCTATTCCGTTTCATCATCATCCATTCAACCATTCTAATAATCATTCTAATTCCAAGCTCCATGACGATGTTCATAACAATAACAATAATAATCCAGACTCTTCTCTGCGCCGCCCTCGTGGCCGTCCTCCTGGTTCCAAGAACAAGCCCAAGCCTCCTATTATCGTCACTCGCGACAGCCCCAACGTCCTTGGATCTCATGTCCTCGAGGTCTCCGCCTCCGCCGATATCGTTGACAGTCTCTCCAATTACGCCCGCCGGAGGGGCAGAGGAGTCAGCATTCTCTCCGGCACCGGCACCGTCGCCAACGTCACTCTCCGTCAGCCTGCCTCTCCGCCCGGGAGTGTGATTACTCTTCATGGCAGGTTCGAGATTCTGTCGCTCACTGGCACCGTGCTTCCCCCGCCGGCTCCGCCGCAGGCTGGGGGGCTGTCCATATTCCTCGCCGGTGCACAGGGCCAGGTGGTAGGAGGGACGGTGGTGGGGCCCTTGGTGGCATCGGGGGCGGTGATTTTGATGGCGGCGTCGTTTTCGAACGCGGTGTTTGAGCGGTTGCCTTTGGAAGAATTAGAAGAGGAAGGGGGCGGAGTGCAAGTAGTTCAGCCAACGGCGTCGCAGTCGTCAGGGGTCACCGGAGGAGGAGGACAGATGGGGGAGGGCGGTGGAGGCAGTGGGAATGCAAATGAAGGAGGCGGCGGAGGAGGAGGAATTCCGTTCATAGGTATGGGAGGATATCCATTTGCGGGAGATTTGTTTGGTTGGGGAAGTGGAAGTGCAGGAAAGCCTCGTGAATTTTAA 924 55.52 MKMAGYSEGGGSASRYVHHQQQLLNPELHLDTTTTTTTPSNSSIPFHHHPFNHSNNHSNSKLHDDVHNNNNNNPDSSLRRPRGRPPGSKNKPKPPIIVTRDSPNVLGSHVLEVSASADIVDSLSNYARRRGRGVSILSGTGTVANVTLRQPASPPGSVITLHGRFEILSLTGTVLPPPAPPQAGGLSIFLAGAQGQVVGGTVVGPLVASGAVILMAASFSNAVFERLPLEELEEEGGGVQVVQPTASQSSGVTGGGGQMGEGGGGSGNANEGGGGGGGIPFIGMGGYPFAGDLFGWGSGSAGKPREF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116753349 116755590 - Tan0006447.2 Tan01g5169 742593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5169 307 ProSiteProfiles PPC domain profile profile. 103 243 IPR005175 -
Tan01g5169 307 MobiDBLite consensus disorder prediction 245 274 - -
Tan01g5169 307 FunFam AT-hook motif nuclear-localized protein 106 235 - -
Tan01g5169 307 MobiDBLite consensus disorder prediction 31 57 - -
Tan01g5169 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 262 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Tan01g5169 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 233 - -
Tan01g5169 307 Gene3D - 108 235 - -
Tan01g5169 307 CDD DUF296 109 193 IPR005175 -
Tan01g5169 307 PIRSF ESCAROLA 28 307 IPR014476 GO:0003680(InterPro)
Tan01g5169 307 MobiDBLite consensus disorder prediction 31 101 - -
Tan01g5169 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 220 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5169 Tan-Chr1:116753349 Tan06g2152 Tan-Chr6:71260477 1.50E-60 dispersed
Tan01g5168 Tan-Chr1:116753349 Tan01g5169 Tan-Chr1:116753349 1.70E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5169 - - - 0.0