Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5181 ATGGCAGCAATGGCGCTATTTCAGCCACACACTTCTCCCTCTGCAATTTCATCTTCCTCCACCTCATTCTACGGGAGTTCTCTTCAACAACTCCGATCGCGCACCACAGGTCTCAATCTTCAAACCAACCATTCTATCACTCATCGTTCCACTTGTAGAGCTTCGTGGCAGGAGCTAGCGGGGGTTCTGATATTCTCCGCAATTCCATTCACGGCTGTGAAAGCCATCGCCAATAGCCCACTCGGAGAGTCGCTCCAGAGGCAATTGGAAAAGAATAAAAAAGCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGACGAGGCCAGAAAAGACAGCTCATGGTATGGAGAAGAGCGCCCTCGCTGGCTTGGTCCAATACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCAGGTGATTATGGATTCGATATTGCAGGTCTGAGTGAAGATCCCGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTTGGTGCTTTAATTCCAGAGATCTTAGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGATATTCAAAACTTAAGGGTGATACACTCGACTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTAATGGTTGGACCGGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAACTATCCAGGTGGTGTGTTGTTTGATCCCTTGAACCTGTCGAAGGATGCTGTAGCTTTTGAGGAACTGAAAGTAAAAGAGATTAAAAATGGTCGGTTAGCCATGGTTGCCTGGGTAGGATTTTACAGTCAAGCAGCACTGACGGGTAAGGGACCAGTCCAGAACCTTCTTGAACACATTTCAGATCCTTTCCACAATAACTTTCTGTCCCTGCTCAACTCTTCATAA 1017 46.12 MAAMALFQPHTSPSAISSSSTSFYGSSLQQLRSRTTGLNLQTNHSITHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQLEKNKKAAVANSSKFKALADEARKDSSWYGEERPRWLGPIPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALIPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAVAFEELKVKEIKNGRLAMVAWVGFYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNSS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116817948 116829314 + Tan0018852.1 Tan01g5181 742605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5181 338 FunFam Chlorophyll a-b binding protein, chloroplastic 123 335 - -
Tan01g5181 338 Gene3D Chlorophyll a/b binding protein domain 123 335 - -
Tan01g5181 338 SUPERFAMILY Chlorophyll a-b binding protein 115 335 - -
Tan01g5181 338 Pfam Chlorophyll A-B binding protein 133 308 IPR022796 -
Tan01g5181 338 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 74 333 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5181 Tan-Chr1:116817948 Tan02g0465 Tan-Chr2:4347962 1.10E-53 dispersed
Tan01g5181 Tan-Chr1:116817948 Tan05g0624 Tan-Chr5:4631506 9.50E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5181 K14172 - csv:101209460 617.076