Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5186 ATGAAAATGCTTCTTCTTCTTCTTCTTTTAGCATCTTCTTCTGCTGGTGCGACGGTTGAGATGACCATGCCCGGCTGCCCTTCCAACTGCGGAAACGTCACCATTCACTATCCTTTTGGCATCGGCTTGGGTTGTTACATGGCCACCGGCTTTGACATTACTTGCAATTCTTCCTATGATCCTCCATTACCCTTCCTCGGCACCACTAACCTTCAAGTTCTGGAAATCTCTTTAACCAACCTTCGCATACGCAACTTTGTCTCTTACAATTGTTACACCCGGACTGGGGCTCTCATTCAAACATCCGGCTCTTGGATCAACTTAGGCCGCCTCCCTTTCTTCTTCTCCACCACCAACAAATTCACCGTCATTGGCTGCGACACCATGGCCTTGATATCTGGGTCCGAGGGCTTGTCCTACACTAGTGGATGCGTTTCCCTGTGCTCCAGCAAGGAAACCGTCATCAATGGCTCTTGCTCTGGAATCGGCTGCTGTCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATTATTGGGAACCTCAACAACCATACCAAAACCTGGCAGTACAATCCTTGCAGCTATGCCTTCCTGGTTGACCAAGACCGCTACACCTTCAAAGTGTCTGATCTGGCCGATCCCAACTTCCTGGCCACCATTAATAGGTTGCCCGTGGTTCTGGACTGGGTTGTGGGTAACAGGACATGTGAACAGGCTCGGAAAGCCTTCTCACCCTACGTTTGCAAGCCCAATTCCGAATGCTTCGATTCAGAGAGCGGTAGCGGTTATCAATGCCGGTGTAGCCAAGGTTATGAAGGGAACCCATATCTCACTCCTGGATGCCAAGACATTGACGAGTGTGTGGGCTCCAACAACCCTTGCGAGGACATATGCGTGAATACCCCTGGCAGTTATTACTGTTCGTGTCCTCACGGTTCCGAAGGCGATGGCAGAAAGGACGGCAAGGGCTGTATCACTAAGACTAAGCAATTTCCTCTTATTCAGCTCACTCTCGGTCTTGGCTCTGGTCTCCTCTTTCTTGTCATCACCGCCACTTGGCTTTACTTCACCATTAAGAAGAGGAACCTCATTAAACTCAGAGAGAAATTCTTCCACCAAAACGGGGGTTTGCTACTGCGGCAACACCAAGGTGCTGTTGAATCCACAAAAATCTTCACCGCGAAGGAGCTGGAGAAAGCGACCGACAATTATGCCGAGACTCGAATCCTGGGCAGAGGTGGAAACGGGACTGTGTATAAAGGAATTCTACCTGATGGCAAAATAGTCGCCATTAAGAAGTCGAAGATTGCGGATGAAAGCCAAATCGAACAATTCATCAACGAAGTCATAATTCTAGCCCAAATAAACCACCGGAATGTGGTGAAACTGATGGGATGCTGCCTGGAGACGGAGGTTCCTCTGCTCGTCTACGAATTCGTGTCGAATGGGACTCTACACAGCCATATTCATGAAAAGAAGAGCTTCAATAACAATTCCATGTGTTGGGAAAACCGGCTGAGAATAGCGACGGAAACGGCAGCAGCACTTTCATACTTGCACTCTGCAGCGTCCACACCTATCATTCACAGAGACGTGAAGTCAGCGAACATACTGTTGGACAAGAAATGCACGGCGAAAGTGGCAGATTTTGGAGCATCGAGGTTTATCCCAATTGATCAGTCGCAGGTAACGACGCTGGTTCAGGGGACGTTTGGGTACTTAGACCCAGAGTACTTTCAAACAAGTCAGTTGACGGAAAAGAGCGATGTGTACAGTTTTGGAGTGGTACTGTTGGAGTTGTTGACGGGGGAGCTGCCGGTGTCGTTCGAGAGAACAGAATCACAGAGAAACCTGTCGTCGTATTTTGTAGCGTCATTGCGACAGAAGAGACTATTTAGGATACTAGAAGGGAGGGTGCTTAGAGAGGGAAAGAGAGAGCAACTAATAGAAACGGCGGAGCTGGCGAGGAGATGCCTGAAACTGAAGGGGGAAGACAGGCCGACGATGAGAGAGGTGGTGGCGGAGCTGGAAAGGCTGAAGAAAAGGGAACATGTAAATGTAAATGGGTTACAGAACTGGGAGGAGACGGAAAGTTTGCTGGAACGGCCACTACAACACGACGCAGAGGCTGAGGATCTTTACCCCATAGGGACCTCTACCTTCCAAGCCTACGGCGATAACGGTAACCGTTGA 2199 49.61 MKMLLLLLLLASSSAGATVEMTMPGCPSNCGNVTIHYPFGIGLGCYMATGFDITCNSSYDPPLPFLGTTNLQVLEISLTNLRIRNFVSYNCYTRTGALIQTSGSWINLGRLPFFFSTTNKFTVIGCDTMALISGSEGLSYTSGCVSLCSSKETVINGSCSGIGCCQTAVPRGLKRFQSIIGNLNNHTKTWQYNPCSYAFLVDQDRYTFKVSDLADPNFLATINRLPVVLDWVVGNRTCEQARKAFSPYVCKPNSECFDSESGSGYQCRCSQGYEGNPYLTPGCQDIDECVGSNNPCEDICVNTPGSYYCSCPHGSEGDGRKDGKGCITKTKQFPLIQLTLGLGSGLLFLVITATWLYFTIKKRNLIKLREKFFHQNGGLLLRQHQGAVESTKIFTAKELEKATDNYAETRILGRGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILAQINHRNVVKLMGCCLETEVPLLVYEFVSNGTLHSHIHEKKSFNNNSMCWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDKKCTAKVADFGASRFIPIDQSQVTTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERTESQRNLSSYFVASLRQKRLFRILEGRVLREGKREQLIETAELARRCLKLKGEDRPTMREVVAELERLKKREHVNVNGLQNWEETESLLERPLQHDAEAEDLYPIGTSTFQAYGDNGNR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116854745 116857121 + Tan0013594.1 Tan01g5186 742610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5186 732 Pfam Calcium-binding EGF domain 285 323 IPR049883 -
Tan01g5186 732 Pfam Wall-associated receptor kinase galacturonan-binding 26 83 IPR025287 GO:0030247(InterPro)
Tan01g5186 732 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 683 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Tan01g5186 732 Gene3D Transferase(Phosphotransferase) domain 1 482 701 - -
Tan01g5186 732 CDD EGF_CA 285 318 - -
Tan01g5186 732 Gene3D Laminin 236 287 - -
Tan01g5186 732 ProSitePatterns Calcium-binding EGF-like domain signature. 285 309 IPR018097 GO:0005509(InterPro)
Tan01g5186 732 FunFam Wall-associated receptor kinase 2 482 700 - -
Tan01g5186 732 FunFam Fibrillin 2 284 322 - -
Tan01g5186 732 FunFam Wall-associated receptor kinase 2 236 283 - -
Tan01g5186 732 Pfam Wall-associated kinase 157 233 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Tan01g5186 732 ProSiteProfiles EGF-like domain profile. 234 284 IPR000742 -
Tan01g5186 732 FunFam Wall-associated receptor kinase 2 379 481 - -
Tan01g5186 732 Pfam Protein kinase domain 406 676 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g5186 732 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Tan01g5186 732 Gene3D Phosphorylase Kinase; domain 1 381 481 - -
Tan01g5186 732 ProSiteProfiles EGF-like domain profile. 285 318 IPR000742 -
Tan01g5186 732 SMART egf_5 237 284 IPR000742 -
Tan01g5186 732 SMART egf_5 288 327 IPR000742 -
Tan01g5186 732 CDD STKc_IRAK 412 681 - -
Tan01g5186 732 Gene3D Laminin 288 328 - -
Tan01g5186 732 ProSiteProfiles Protein kinase domain profile. 406 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g5186 732 SUPERFAMILY Protein kinase-like (PK-like) 389 679 IPR011009 -
Tan01g5186 732 SMART egfca_6 285 327 IPR001881 GO:0005509(InterPro)
Tan01g5186 732 ProSitePatterns Protein kinases ATP-binding region signature. 412 435 IPR017441 GO:0005524(InterPro)
Tan01g5186 732 SMART serkin_6 406 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g5186 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g5186 732 SUPERFAMILY EGF/Laminin 283 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5186 Tan-Chr1:116854745 Tan11g1221 Tan-Chr11:10249675 2.00E-180 dispersed
Tan09g0559 Tan-Chr9:49546920 Tan01g5186 Tan-Chr1:116854745 1.60E-47 dispersed
Tan01g5186 Tan-Chr1:116854745 Tan11g1218 Tan-Chr11:10164484 1.10E-191 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67161 PF00069 Pkinase 9.50E-52 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5186 - - - 0.0