Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0011 ATGACTTTAAGTTTCGCGAAACGAGGCCGAATATGTTCACTTCTGCTTCCAGAAAACATCACCGATGGGATACTTACATGTTTTGATTATTTTTCCTGCTTTCATATAAGCACCAAATGGTATTCGAGATCAGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGAAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCTACAAATAGCTAATAGTGAAGATCTTCCAGAAAGACTTGGGGAGCCAGATTGTCCTTACTTTTTGAAAACTCAAAGATGTAAATTTGGTTCAAGGTGCAAGTTCAATCACCCTAAAGATAGATCTGATTCTGAGGGTGCTGAGAAATCTGGTGCTTCAACATTACCTGAGAGACCATCTGAGCCACTGTGTGCATTCTATGTTAAGACTGGAAATTGCAAATTTGGTGTTAACTGCAAGTTCCATCACCCAAAAGATATTCGAATTTTATCTGGGGAAGAAAATGGAAATAGTGAACAAACTTTGATGGAAGCAAAGACAGAAGGAAGAATTGGAGACTTCAAGCTTGTTAAGCCTCCTGTTTCATTTTCACCAGCACTAATACACAATTCTAAAGGACTTCCGATTAGACCGGGTGAAGTGGATTGCCCATTCTACTTAAAAACTGGCAGTTGCAAGTACGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCCACTCCAGCAATTGTTCATCCTGCTATGGTCTCAGCTGCTAATATGAATATTGGAATTGTTAATCCGTCTAATGCTATTTATCAAGCTATTGATCCCAGATTGATTCAGCCACTGTTGGGATCTAGCTCAAGTACTTACCCTCAACGACCTGGGCAGATAGAATGTGATTATTATATGAAGACTGGGGACTGTAAATTTGGGGAACGATGCAAATTTCATCACCCTATTGATCGGTCAGCACCAAAGCAGGCTACTCAAGATAATGTGAAACTAACCCTAGCAGGACTACCCAGGAGAGAGGATGCCATAATTTGTCCATATTATCTGAAAACCGGTACATGCAAGTATGGTTCTACTTGCAAATTTGACCACCCACCTCCTGGAGAAGTAATGGCAATGGCAGCAATACAATCTGTTTCAGGAAAAGAAGGCGAAGAACGGATAGATGAATCAGTTAATGTACAACAGCAGTAG 1371 41.21 MTLSFAKRGRICSLLLPENITDGILTCFDYFSCFHISTKWYSRSVLYDQTVLGSYNTLGKSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVLQIANSEDLPERLGEPDCPYFLKTQRCKFGSRCKFNHPKDRSDSEGAEKSGASTLPERPSEPLCAFYVKTGNCKFGVNCKFHHPKDIRILSGEENGNSEQTLMEAKTEGRIGDFKLVKPPVSFSPALIHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAIVHPAMVSAANMNIGIVNPSNAIYQAIDPRLIQPLLGSSSSTYPQRPGQIECDYYMKTGDCKFGERCKFHHPIDRSAPKQATQDNVKLTLAGLPRREDAIICPYYLKTGTCKYGSTCKFDHPPPGEVMAMAAIQSVSGKEGEERIDESVNVQQQ 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 379620 418172 - Tan0015051.3 Tan02g0011 742637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0011 456 Gene3D - 183 303 - -
Tan02g0011 456 Gene3D - 87 182 - -
Tan02g0011 456 Gene3D - 346 439 - -
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 398 426 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 403 425 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 291 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 374 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 213 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 MobiDBLite consensus disorder prediction 165 186 - -
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 401 425 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 351 376 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 PANTHER PROTEIN PHOSPHATASE RELATED 250 311 IPR050974 GO:0003729(PANTHER)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 269 292 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 FunFam zinc finger CCCH domain-containing protein 37 346 439 - -
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 145 168 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 265 292 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 186 213 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 398 425 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 88 115 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 140 167 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 189 214 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0009 Tan-Chr2:379620 Tan02g0011 Tan-Chr2:379620 5.70E-206 dispersed
Tan02g0011 Tan-Chr2:379620 Tan05g0682 Tan-Chr5:4944075 3.00E-17 dispersed
Tan02g0010 Tan-Chr2:379620 Tan02g0011 Tan-Chr2:379620 2.30E-180 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26634 PF00642 zf-CCCH 1.30E-10 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0011 - - - 0.0