Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0011 ATGACTTTAAGTTTCGCGAAACGAGGCCGAATATGTTCACTTCTGCTTCCAGAAAACATCACCGATGGGATACTTACATGTTTTGATTATTTTTCCTGCTTTCATATAAGCACCAAATGGTATTCGAGATCAGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGAAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCTACAAATAGCTAATAGTGAAGATCTTCCAGAAAGACTTGGGGAGCCAGATTGTCCTTACTTTTTGAAAACTCAAAGATGTAAATTTGGTTCAAGGTGCAAGTTCAATCACCCTAAAGATAGATCTGATTCTGAGGGTGCTGAGAAATCTGGTGCTTCAACATTACCTGAGAGACCATCTGAGCCACTGTGTGCATTCTATGTTAAGACTGGAAATTGCAAATTTGGTGTTAACTGCAAGTTCCATCACCCAAAAGATATTCGAATTTTATCTGGGGAAGAAAATGGAAATAGTGAACAAACTTTGATGGAAGCAAAGACAGAAGGAAGAATTGGAGACTTCAAGCTTGTTAAGCCTCCTGTTTCATTTTCACCAGCACTAATACACAATTCTAAAGGACTTCCGATTAGACCGGGTGAAGTGGATTGCCCATTCTACTTAAAAACTGGCAGTTGCAAGTACGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCCACTCCAGCAATTGTTCATCCTGCTATGGTCTCAGCTGCTAATATGAATATTGGAATTGTTAATCCGTCTAATGCTATTTATCAAGCTATTGATCCCAGATTGATTCAGCCACTGTTGGGATCTAGCTCAAGTACTTACCCTCAACGACCTGGGCAGATAGAATGTGATTATTATATGAAGACTGGGGACTGTAAATTTGGGGAACGATGCAAATTTCATCACCCTATTGATCGGTCAGCACCAAAGCAGGCTACTCAAGATAATGTGAAACTAACCCTAGCAGGACTACCCAGGAGAGAGGATGCCATAATTTGTCCATATTATCTGAAAACCGGTACATGCAAGTATGGTTCTACTTGCAAATTTGACCACCCACCTCCTGGAGAAGTAATGGCAATGGCAGCAATACAATCTGTTTCAGGAAAAGAAGGCGAAGAACGGATAGATGAATCAGTTAATGTACAACAGCAGTAG 1371 41.21 MTLSFAKRGRICSLLLPENITDGILTCFDYFSCFHISTKWYSRSVLYDQTVLGSYNTLGKSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVLQIANSEDLPERLGEPDCPYFLKTQRCKFGSRCKFNHPKDRSDSEGAEKSGASTLPERPSEPLCAFYVKTGNCKFGVNCKFHHPKDIRILSGEENGNSEQTLMEAKTEGRIGDFKLVKPPVSFSPALIHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAIVHPAMVSAANMNIGIVNPSNAIYQAIDPRLIQPLLGSSSSTYPQRPGQIECDYYMKTGDCKFGERCKFHHPIDRSAPKQATQDNVKLTLAGLPRREDAIICPYYLKTGTCKYGSTCKFDHPPPGEVMAMAAIQSVSGKEGEERIDESVNVQQQ 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 379620 418172 - Tan0015051.3 Tan02g0011 742637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0011 456 Gene3D - 183 303 - -
Tan02g0011 456 Gene3D - 87 182 - -
Tan02g0011 456 Gene3D - 346 439 - -
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 398 426 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 403 425 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 291 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 374 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 213 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 MobiDBLite consensus disorder prediction 165 186 - -
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 401 425 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 351 376 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 PANTHER PROTEIN PHOSPHATASE RELATED 250 311 IPR050974 GO:0003729(PANTHER)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 269 292 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 FunFam zinc finger CCCH domain-containing protein 37 346 439 - -
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 145 168 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 265 292 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 186 213 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 398 425 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 88 115 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SMART c3hfinal6 140 167 IPR000571 GO:0046872(InterPro)
Tan02g0011 456 SUPERFAMILY CCCH zinc finger 189 214 IPR036855 GO:0046872(InterPro)
Tan02g0011 456 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0011 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0009 Tan-Chr2:379620 Tan02g0011 Tan-Chr2:379620 5.70E-206 dispersed
Tan02g0011 Tan-Chr2:379620 Tan05g0682 Tan-Chr5:4944075 3.00E-17 dispersed
Tan02g0010 Tan-Chr2:379620 Tan02g0011 Tan-Chr2:379620 2.30E-180 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26634 PF00642 zf-CCCH 1.30E-10 CL0537 Tan TF