Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0015 ATGTTCCATCCGAAGAAAGCGTCGAGTAATATGAATAATTCTCATGAGAGAGCAGCAGCTGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGTTGGACTGTCGAGCTTCATGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAAACCATCATGAGAGTTATGGGTGTAAAAGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAATTCAATGATCACTCAATTAAGGATGGTATGAGAGCTTCAGGTCTTGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGCGAAGATTACACGAACAATTAGAGGTACAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAGAAGGCTTGTCAAACCCTCGCCGGTGAAAACATGGCAGCTTCCGGCGGGGGATACAAGGCCATGGGTGGCAATATCCCAAATAATAATAACGGACAGGGCGGTGGCATTGGGGACATGGGCGGAGGAGCTGGCATCAAAGATTTTGGATTCCCTTCTTTTCAAGACCTCAACCTCTATGGATCAGGAAGCGACCAGCTCGACCTTCAGCAAAACGTGGACGGATTCATGGCTCACAATGAAAGCTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCACCGCCGGCAAATTACGGATCGGGAAAAGGTGCGTTGGACTGGGCGGATGATCTCCGGCTGCAAGACATAGGAATGGCGCCGCCGTCGCAAGAAGATGATGATCATTTCAAAGCTGGCATTGGTGCAACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCCAAGCCAGTGGTGTCGGATGACACTGCGCCCTTAAAGCTTCAGAGGCCGTCGCCCAGAAGGACACCCCTTTCGGCGGATAGACCCAATCAGCCTCTTACCAGCGCTCCTCAGCCCACACTTTCACCTTTTGGTTAA 1110 50.9 MFHPKKASSNMNNSHERAAAGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGGYKAMGGNIPNNNNGQGGGIGDMGGGAGIKDFGFPSFQDLNLYGSGSDQLDLQQNVDGFMAHNESLLCLGKKKPRPPPANYGSGKGALDWADDLRLQDIGMAPPSQEDDDHFKAGIGATLVERDHLEEMYEAKPVVSDDTAPLKLQRPSPRRTPLSADRPNQPLTSAPQPTLSPFG 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 571209 573821 - Tan0003439.2 Tan02g0015 742641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0015 369 MobiDBLite consensus disorder prediction 323 369 - -
Tan02g0015 369 Pfam Myb-like DNA-binding domain 39 89 IPR001005 -
Tan02g0015 369 Gene3D - 36 94 - -
Tan02g0015 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 199 IPR046955 GO:0003700(InterPro)
Tan02g0015 369 FunFam Myb family transcription factor 36 94 - -
Tan02g0015 369 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 92 IPR006447 GO:0003677(InterPro)
Tan02g0015 369 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Tan02g0015 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Tan02g0015 369 MobiDBLite consensus disorder prediction 348 369 - -
Tan02g0015 369 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0015 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0015 Tan-Chr2:571209 Tan05g0577 Tan-Chr5:4195205 1.60E-82 dispersed
Tan02g0014 Tan-Chr2:571209 Tan02g0015 Tan-Chr2:571209 3.10E-195 tandem
Tan02g0015 Tan-Chr2:571209 Tan02g0016 Tan-Chr2:571209 1.00E-153 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26636 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Tan TF