Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0023 ATGGTGGCTACCAAGGCTAAAGTCTGCCTGGATCCGGGTCTGCCTACTGAGGATAATCGCACCCGTAGGAGTGCAATAGGAAGTTTTAAGGTTTATACGGAGAAAGATAAGATTAAAGCTGATTCCTGTTGCAAGAAACCTGTAACAATAAAAAAGGAGCCTTCAACCGATTGTACTATTCAACCAAAGGGAGGCCTGGAACGCTCAGAGAAGAACACGGAGAAAATTGAAGTTTCTGGAGCCAAAAGCATGAGAAGAAGAGCATTGGCAGATGTGAGTAATGTCCGAGGCAACTTTTCTTGGAGAACAATGCAAGATGGCTCCAAGCATAAGGTTTCAACTGGGACTAGAGCTAGCACTGCTGGCGTCAATGTCTCCTTTAGGAAATCATTGGGAAAAACAGCGAAGAATGCAGGGGAAGCTGTTGGTGACTTGCATGCTTCAGAAAAAGGGCGTGTTAAAGATTCAAAAGGTTGTTCGGTCTATGAAAGAAACAAAACAGATGGCCCCTGCTGTGATTCCAATACTGCCAGGAGAATTAAAAAGATCTCTCTTGTGCAAACAAGGAGATCTTTACCAATGCTAAAGAGGATGAACCAGGCAAATGCTTCGAACCTAAAGGATGTTACTGAGAAGCCAGAAAAGACCAATCGATCTCAAGCATGTTTGACTAAATCTGGCAAGACTGCTATCCAGGCAAAAAATTCCAGAAGTCAGCTAAAGAATAATCGTGTGAGCGATGGCTTCATTATAATGGGTCAAGCCAAGGTGGACTCAAATGCACTGTCGAAAAAGTCTACTAAGCCCATACTAAGGAGCATGAAGAAGGCTTCTGGTACTCAAGAGGCACCAAAACCCAAATATGCATCAGCTGTAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGAACCCCCAGTATCTCTTTGTGAGGACATAACTAATGTGTCCCTTCAAGGGAAGGATGCATCTGAACCTACTTGTAATCCAAGTACGAGTTCAGATTTCACTGTCAAGAAAAAAGTTGGTCGTAGGAGATCATATACATCCTTGTTGGTCGCTGGAGCAAAGTTGCTGGATAAATGTGCTGTAGTTACAGAGATAGCTAACCTACCGAGTATTGACAATGACTACAACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATATCATTATTATTGGGTTACAGAGGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGATCGGTATCTCTCCCAAGTCATAATCAAGAAGAATGAAATGCAGTTGGTTGGCCTTACTGCACTGTTATTGGCATCGAAATATGAAGATTTTTGGCATCCTAGGGTTAAAGATCTAATTAGCATATCAGCTGAGTCCTACTCAAGAGAGCAAATGCTACAAATGGAAGCGCTCATTCTGAAGAAGTTGAAGTTTCGCTTGAACATGCCGACTCCATATGTTTTTATGTTAAGATTTCTCAAGGCTGCTCAGTCTAATGTTCAGCTTGAACACTTATCATTTTACTTGATTGAGCTGGCCTTGGTTGAATATGAAGCTCTTAGTTTTAAGCCGTCGTTGTTATGTGCATCGGCTCTATATGTGGCACGGTGTACATTGCGGATAAGTCCATACTGGACCCCACTACTAAACAAACATACACGCTACGAAGTATCCCAAATAAGAGAATGTGCTGAGATGATCTTGAACTTTCACCAATCTGCTCAATTGGGACAGCTGAAAGTCACGTATGAGAAGTACATGAAACCTGATTTTAATGGTGTTGCGGCTGTAAAGCCACTCGGCAAGCTTCCTCTTTGA 1839 41.92 MVATKAKVCLDPGLPTEDNRTRRSAIGSFKVYTEKDKIKADSCCKKPVTIKKEPSTDCTIQPKGGLERSEKNTEKIEVSGAKSMRRRALADVSNVRGNFSWRTMQDGSKHKVSTGTRASTAGVNVSFRKSLGKTAKNAGEAVGDLHASEKGRVKDSKGCSVYERNKTDGPCCDSNTARRIKKISLVQTRRSLPMLKRMNQANASNLKDVTEKPEKTNRSQACLTKSGKTAIQAKNSRSQLKNNRVSDGFIIMGQAKVDSNALSKKSTKPILRSMKKASGTQEAPKPKYASAVIKSISSTASSSKIVEPPVSLCEDITNVSLQGKDASEPTCNPSTSSDFTVKKKVGRRRSYTSLLVAGAKLLDKCAVVTEIANLPSIDNDYNQMEVAEYVEEIYHYYWVTEVHFKFDLMPETLFLSVTLFDRYLSQVIIKKNEMQLVGLTALLLASKYEDFWHPRVKDLISISAESYSREQMLQMEALILKKLKFRLNMPTPYVFMLRFLKAAQSNVQLEHLSFYLIELALVEYEALSFKPSLLCASALYVARCTLRISPYWTPLLNKHTRYEVSQIRECAEMILNFHQSAQLGQLKVTYEKYMKPDFNGVAAVKPLGKLPL 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 602421 608064 + Tan0014015.1 Tan02g0023 742649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0023 612 Gene3D - 482 610 - -
Tan02g0023 612 PIRSF Cyclin_A_B_D_E 51 235 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan02g0023 612 PIRSF Cyclin_A_B_D_E 188 397 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan02g0023 612 PIRSF Cyclin_A_B_D_E 398 611 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan02g0023 612 FunFam putative cyclin-B3-1 isoform X3 486 611 - -
Tan02g0023 612 SMART Cyclin_C_2 490 607 IPR004367 -
Tan02g0023 612 SMART cyclin_7 494 576 IPR013763 -
Tan02g0023 612 SMART cyclin_7 397 481 IPR013763 -
Tan02g0023 612 SUPERFAMILY Cyclin-like 384 488 IPR036915 -
Tan02g0023 612 SUPERFAMILY Cyclin-like 489 607 IPR036915 -
Tan02g0023 612 PANTHER CYCLINS 397 594 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan02g0023 612 Gene3D - 377 481 - -
Tan02g0023 612 FunFam Cyclin N-terminal domain containing 2 380 485 - -
Tan02g0023 612 Pfam Cyclin, N-terminal domain 394 488 IPR006671 -
Tan02g0023 612 Pfam Cyclin, C-terminal domain 490 606 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0023 K21777 - - csv:101213908 943.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0023 Tan-Chr2:602421 Tan05g0055 Tan-Chr5:582263 2.70E-53 dispersed
Tan02g0023 Tan-Chr2:602421 Tan01g3680 Tan-Chr1:101634757 2.80E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1155 Blo04g00460 . . . . . . . . . . . . . Sed04g3556 . . Bhi05g01991 Tan02g0023 Cmetu01g1284 . Hepe02g0012 . . . . . . . . . . . . . . Csa07g01213 . . . . . . Bpe15g00922 . Bma03g00492 . . . . . . . . Cpe15g00905 . . . . . . . . . . . . . . . . . Chy01g00850 Cme01g01500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012027 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 30