Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0025 ATGCATAAATTAAGCAGAGGACACCGAGATAAACTCCAGCAGTTTATGGCTATAACTGGTACAAGTGAAAAGGTTGCTCATCAGGCCCTGAAGGCTAGTGAGTGGCATCTTGAAGGAGCTATTGATGTATTTTACAGTCAACCCCAAATCAAAGCATTCACCGACTCTAGACATTTGGAAGAGCTTTATAACAGATATAAAGATCCATATGTCGATATGATATTGGCTGATGGTATCTCACTGCTCTGCAATGACCTTCAGGTGGATCCTCAAGATATAGTTATGTTGGTTGTTTCTTGGCATATGAAGGCGAACACAATGTGTGAGTTTTCCAAACAGGAGTTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCCGAGAAAGGATACCATATATGCGGTCTGAGTTGAAAGACGAACAAAAGTTCCGTGATATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAAAAATCTTTAGCGTTGGACACTGCAATTGGAATGTGGCAGTTGCTATTTGCTGAAAAGCAGTGGCCCCTGGTTGACCACTGGTGTCAGTTCTTGCAGGCTCGGCATAATAAAGCTATTTCTAGGGACACATGGTCTCAACTTCTGGAGTTTGCAAGGTTACACCCAAGAAAGTTTGCAGGGTTCCTCTCTTTGGGTGTCAGTGGCGAAACTATGTTGTAA 708 42.66 MHKLSRGHRDKLQQFMAITGTSEKVAHQALKASEWHLEGAIDVFYSQPQIKAFTDSRHLEELYNRYKDPYVDMILADGISLLCNDLQVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDEQKFRDIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQARHNKAISRDTWSQLLEFARLHPRKFAGFLSLGVSGETML 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 613298 621578 + Tan0008758.2 Tan02g0025 742651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0025 235 Gene3D - 5 47 - -
Tan02g0025 235 Pfam Cullin binding 131 216 IPR005176 -
Tan02g0025 235 PANTHER RP42 RELATED 24 216 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Tan02g0025 235 CDD UBA_DCNL 8 48 - -
Tan02g0025 235 Gene3D - 53 142 - -
Tan02g0025 235 FunFam Defective in cullin neddylation protein 53 142 - -
Tan02g0025 235 Pfam UBA-like domain 10 48 - -
Tan02g0025 235 FunFam DCN1-like protein 3 143 224 - -
Tan02g0025 235 SUPERFAMILY UBA-like 5 46 IPR009060 GO:0005515(InterPro)
Tan02g0025 235 Gene3D Cullin, PONY binding domain 143 227 IPR042460 -
Tan02g0025 235 FunFam Defective in cullin neddylation protein 6 47 - -
Tan02g0025 235 ProSiteProfiles DCUN1 domain profile. 54 235 IPR005176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0025 K17822 - - csv:101216476 427.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0024 Tan-Chr2:613298 Tan02g0025 Tan-Chr2:613298 1.90E-125 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1150 Blo04g00462 Blo13g00602 . . . . Bma08g00821 . . . . . . . Sed05g1833 Cpe04g00866 . Bhi05g01993 Tan02g0025 . . . . . . . . . . . . . . . . . Csa07g01210 . . . . . . Bpe15g00919 . Bma03g00495 . . . . . . . . Cpe15g00904 . . . . . . . . . . . . . . . . . . Cme01g01501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003443 1 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 10 2 1 48