Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0029 ATGGCCTACATGTTCAAGTTTGATTCTACACATGGTAATTTTAAGGGCACGATTAACATTGTGGATGATTCAACTTTGGAAATCAATGGGAAACAATTAAAAGTCTTAAGTAAGAGGGATCCGGCAGAAATTCCTTGGGGCGAGTTTGGGGTTGAGTTTGTTGTTGAATCCTCTGGGGTTTTCACGACGACAAATAAGGCATCAGCACACTTGAAGGGTGGAGCCAGGAAAGTTGTCATATCAGCTCCATCAGCTGATGCACCTATGTTCGTTGTTGGAGTTAATGAGAAGACTTATAAGCCAAGCATGGATATTGTTTCAAATGCAAGTTGTACCACGAATTGTCTTGCTCCTCTTGCGAAGGTGGTTCACGAGGTTTTTGGTATCGCAGAAGGTTTGATGACAACCGTGCATGCAACTACAGCTACTCAAAAGACTGTTGATGGCCCCTCAATGAAGGATTGGCGTGGGGGTCGTGGAGCTGCACAAAATATCATCCCAAGTTCCACCGGGGCTGCAAAGGCTGTGGGAAAAGTTCTTCCTGAGCTCAACGGAAAACTTACAGGGATGGCATTTCGTGTTCCAACACCTAATGTATCAGTTGTGGACTTGACTTGTAGACTAGAGAAGAGTGCTTCTTATGAAGATGTAAAAGCTGCAATCAAGTATGCCTCAGAAGGCCCACTCAAGGGTATCCTTGGTTACACGGATGAGGATGTTGTCTCCAATGATTTTGTTGGTGATTCAAGGTCAAGCATATTCGATGCAAAGGCCGGAATAGGTCTCAGCGACAACTTCATGAAGCTCATCTCCTGGTATGACAATGAGTGGGGATACAGCAACCGAGTTCTGGACCTCATAGAGCACATGGCGTTGGTGGCAGCCAACAAGTGA 894 45.3 MAYMFKFDSTHGNFKGTINIVDDSTLEINGKQLKVLSKRDPAEIPWGEFGVEFVVESSGVFTTTNKASAHLKGGARKVVISAPSADAPMFVVGVNEKTYKPSMDIVSNASCTTNCLAPLAKVVHEVFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSDNFMKLISWYDNEWGYSNRVLDLIEHMALVAANK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 628867 633094 - Tan0010272.2 Tan02g0029 742655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0029 297 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 70 83 IPR020831 GO:0016620(InterPro)
Tan02g0029 297 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 105 123 IPR020831 GO:0016620(InterPro)
Tan02g0029 297 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 132 148 IPR020831 GO:0016620(InterPro)
Tan02g0029 297 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 189 206 IPR020831 GO:0016620(InterPro)
Tan02g0029 297 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 229 244 IPR020831 GO:0016620(InterPro)
Tan02g0029 297 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 291 IPR020831 GO:0016620(InterPro)
Tan02g0029 297 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 1 285 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Tan02g0029 297 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 110 273 - -
Tan02g0029 297 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 109 116 IPR020830 GO:0016620(InterPro)
Tan02g0029 297 FunFam Glyceraldehyde-3-phosphate dehydrogenase 110 275 - -
Tan02g0029 297 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 63 IPR020828 GO:0051287(InterPro)
Tan02g0029 297 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 116 273 IPR020829 GO:0016620(InterPro)
Tan02g0029 297 PIRSF GAPDH 1 295 IPR020831 GO:0016620(InterPro)
Tan02g0029 297 Gene3D Dihydrodipicolinate Reductase; domain 2 110 275 - -
Tan02g0029 297 SMART gp_dh_n_7 1 111 IPR020828 GO:0051287(InterPro)
Tan02g0029 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 127 IPR036291 -
Tan02g0029 297 Gene3D - 1 289 - -
Tan02g0029 297 FunFam Glyceraldehyde-3-phosphate dehydrogenase 1 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0029 Tan-Chr2:628867 Tan02g0031 Tan-Chr2:628867 1.40E-169 dispersed
Tan02g0028 Tan-Chr2:628867 Tan02g0029 Tan-Chr2:628867 3.50E-169 tandem
Tan02g0029 Tan-Chr2:628867 Tan02g0030 Tan-Chr2:628867 5.30E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0029 K00134 - csv:101215988 573.933