Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0079 ATGTCGAATGATGAAGGCAAAAACCTGTACCAGCCGTATGATCCATTTCTTTACAACCAGTTGGATATGAACCGTTCGATCTTCCAACAACAGCCGTTGGATCCAGCTTTGATGAGTTTCACGAACTTCTTCGACACGTCGTTGGATTACAACAGCCTATCGAGGGCGTTCGACGTGTCGTGCTCTTCCTCAGAAGTGATTTCGGCGGTGGACGACATGTCGAAAAAGAAGGCTTCAGGTGGAGGACGAGGAGGAAAAAGTTTAAACCAATCGTCGACGCCAAATTCATCAGTGTCGTCTTCGTCTAATGAGGCTGCAGCTGAAGAAGATTCAGTCAAGAGCAAGAAAGAAGAGTCAAAAGAGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACATAGCAAAAAAGAAAGAGAAACGGCAGAGGGAGCCACGGTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCAGTAAAAAATAGTCCTTACCCCAGAAGTTACTACAGATGCACCAGTCAAAAATGCTTAGTGAAAAAACGAGTTGAAAGATCATACCAAGATCCATCTGTGGTGATAACTACATATGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCAGGAATAATGTCGTCTCCGTTTTACACATCGGCATCGACATCGGCAACAGCAGCCTCCTCGGGGCCGACCCTTCCCCAAGAACTCTTCTCGCATTTGCTACCGATCACCAACTGCCAGACCGACCCGGCGTCGGCGTCGGCGTCGTCGATGTTGTACCAAAATCTAAACCTCCAGCAACACCTTCAAATGCCTGATCATTATGGTTTGTTACAAGATTTGTTCACTCAAAAATAG 915 45.68 MSNDEGKNLYQPYDPFLYNQLDMNRSIFQQQPLDPALMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISAVDDMSKKKASGGGRGGKSLNQSSTPNSSVSSSSNEAAAEEDSVKSKKEESKECENKDEEKSKKQNIAKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYTSASTSATAASSGPTLPQELFSHLLPITNCQTDPASASASSMLYQNLNLQQHLQMPDHYGLLQDLFTQK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 933675 936294 - Tan0007608.1 Tan02g0079 742705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0079 304 SMART WRKY_cls 159 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0079 304 FunFam WRKY transcription factor 57 145 219 - -
Tan02g0079 304 MobiDBLite consensus disorder prediction 84 107 - -
Tan02g0079 304 Gene3D WRKY domain 144 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0079 304 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0079 304 MobiDBLite consensus disorder prediction 108 146 - -
Tan02g0079 304 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 227 IPR044810 GO:0003700(InterPro)
Tan02g0079 304 SUPERFAMILY WRKY DNA-binding domain 152 219 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0079 304 MobiDBLite consensus disorder prediction 72 146 - -
Tan02g0079 304 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0079 304 Coils Coil 105 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0079 Tan-Chr2:933675 Tan06g2778 Tan-Chr6:79967303 2.80E-35 dispersed
Tan10g0253 Tan-Chr10:2242871 Tan02g0079 Tan-Chr2:933675 4.10E-16 dispersed
Tan11g0469 Tan-Chr11:3856132 Tan02g0079 Tan-Chr2:933675 2.00E-15 dispersed
Tan03g0938 Tan-Chr3:65819121 Tan02g0079 Tan-Chr2:933675 1.50E-19 transposed
Tan03g2664 Tan-Chr3:79696956 Tan02g0079 Tan-Chr2:933675 3.90E-41 transposed
Tan02g0079 Tan-Chr2:933675 Tan05g0625 Tan-Chr5:4648497 4.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26640 PF03106 WRKY 2.60E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0079 - - - 0.0