Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0108 ATGTCGGGTCAAAGCCAACGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCCCGTCTTGTGGGTGCAACCAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTTTGACTGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCTCAGCTAAGGAATCAATGGGGGAAGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTCCTCGAGAATGTCCAAAACGCAGCTATTAAGATTCGATCTCGGCAGGAGAATATTGCTGGTGTAAAACTCCCAAAATTTGAACACTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCATCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCTTCGCTTCAGACATCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTTAATGCTCTAGAGAATGTTGTGAAGCCAAGGCTAGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGCTATAAGAAAAGGGAAATTGAAAAACAACGTGCCAATGCCAAGCTATATGCTGAGGAACAACTTGCTGAGAAGATATCTTTGCAAAAGGGCGTCTCCATAAATTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGACGAGGATATTATTTTTTGA 786 42.75 MSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGEVMKTSAFSLTEAKYVAGDNIKHIVLENVQNAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIHLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKKREIEKQRANAKLYAEEQLAEKISLQKGVSINSAHNLLSAAAEKDEDIIF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1092245 1094230 - Tan0008716.2 Tan02g0108 742734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0108 261 Pfam ATP synthase subunit D 17 208 IPR002699 GO:0046961(InterPro)
Tan02g0108 261 Gene3D - 1 198 - -
Tan02g0108 261 PANTHER V-TYPE ATP SYNTHASE SUBUNIT D 1 261 IPR002699 GO:0005774(PANTHER)|GO:0033176(PANTHER)|GO:0046961(InterPro)
Tan02g0108 261 Coils Coil 179 199 - -
Tan02g0108 261 FunFam V-type proton ATPase subunit D 1 198 - -
Tan02g0108 261 NCBIfam V-type ATP synthase subunit D 9 212 IPR002699 GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0108 Tan-Chr2:1092245 Tan05g1770 Tan-Chr5:57536861 1.90E-133 dispersed
Tan02g0107 Tan-Chr2:1092245 Tan02g0108 Tan-Chr2:1092245 5.70E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0108 K02149 - csv:101213101 483.026