Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0130 ATGCGGCGAGGCAGAGCCACGGATCAATTGGCGGCGGCGCAACCAGTTCATGAACCAGTTAAAGAAGTCCGATTCAGAGGCGTTCGGAAGCGTCCATGGGGCCGATACGCTGCCGAGATTAGAGATCCCTGGAAGAAGACTCGCGTTTGGCTCGGCACCTTCGATACAGCGGAGGATGCTGCTAGAGCTTACGACGCCGCCGCTCTCTCTCTCCGGGGACCGAAGGCGAAGACGAACTTTCCGTTGCATCCGTCGGTGATCTCTGTTCATCAGCAAATTCCATTCTCGCAGGAGTTTCACGATTCCGGCGGATTCTGCAAGATTAGCAACATTCCGGTCAATAGACCTACGTCGAGCAGTCTAAGCTCCACCGTGGAGTCTTTCAGCGGGCCGCGGGTTTCGATTCCGGCTCCGTCGGTTCCGAAGCTCCGCCGTAACTCCCTGCCGCCAGTCTCGCCCGACGATTGCCATAGCGACTGCGATTCATCGTCTTCCGTTGTTGATGACAGTGAGGAATATGCTCAGACGTCGTCAATTCGCAGAGTGTTGCCGTTCGATCTGAATCTACCTCCTCCACTGCCGCCGCCGCACGACATCGATTTATCCGGTGACGATCTTCAGGTTACTACTCTATGTTTTTGA 642 55.76 MRRGRATDQLAAAQPVHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDAAALSLRGPKAKTNFPLHPSVISVHQQIPFSQEFHDSGGFCKISNIPVNRPTSSSLSSTVESFSGPRVSIPAPSVPKLRRNSLPPVSPDDCHSDCDSSSSVVDDSEEYAQTSSIRRVLPFDLNLPPPLPPPHDIDLSGDDLQVTTLCF 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1217897 1219161 - Tan0007110.1 Tan02g0130 742756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0130 213 MobiDBLite consensus disorder prediction 116 130 - -
Tan02g0130 213 MobiDBLite consensus disorder prediction 116 173 - -
Tan02g0130 213 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677(InterPro)
Tan02g0130 213 CDD AP2 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g0130 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 178 - -
Tan02g0130 213 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g0130 213 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g0130 213 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g0130 213 Pfam AP2 domain 24 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g0130 213 FunFam Ethylene-responsive transcription factor 2 23 83 - -
Tan02g0130 213 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan02g0130 213 SMART rav1_2 24 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1742 Tan-Chr1:18603400 Tan02g0130 Tan-Chr2:1217897 9.60E-51 dispersed
Tan02g0130 Tan-Chr2:1217897 Tan05g2453 Tan-Chr5:75675136 3.70E-26 dispersed
Tan02g0130 Tan-Chr2:1217897 Tan03g2540 Tan-Chr3:78651979 1.30E-16 wgd
Tan02g0130 Tan-Chr2:1217897 Tan05g0679 Tan-Chr5:4924897 1.20E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26641 PF00847 AP2 7.90E-15 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0130 K09286 - csv:101210265 313.538