Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0149 ATGTTTCTATCTTTTTCTAACAATCAAAACATAAAGAGAATCACAATTCACAAATCCATTCCCACTGGAAAAAAAATGAAAACCAGTGCGGGCGGCGAGATTGTTCCGGTCCAAGGCGGCCATATTCTCCGGTCTACTGGCCGGAAAGACCGCCACAGTAAGGTCTTCACGGCCAAAGGCCCTCGTGACCGCCGTGTGAGATTGTCGGCTCACACCGCCATCCGATTCTACGATGTGCAGGACCGGTTGGGCTACGATCGGCCCAGTAAAGCCGTCGATTGGCTAATCAAGAAGGCTAAATTCGCCATTGATAAGCTTCAAGAGCTTCCCCCTTATTTCCCCATCGCCAATGGATTCGCTGACCCAAATCGGAAAACGGGAGACGGGGAAACAGAGTCCTCTGAGTTTGATTCCCAGTTGCAGTTGCCATCCGCCGCCGGAAACTTCGCTCCGTCGCTTGAATCGTTCTTTCCGACGAGCTCTGCCACTACTTCTATTAATTTCCAGGGATATCCAGTGGATTTGATTTTGAGACCCACCGACCCGGTTAGAGATCTCGCCCTATCTCTCCATAACTTTCACGATTCTCGTCTAATTCCGTCAGAGCAAGATGCGACCCCTTCGCCGGAAGATCACCAACGGCTTATCGCCGATTCGATTCCGGCAGGGTACGAAGGAGGCGACGCCGGGCTGTGGCTACAGCAGCCATTGATAGGGCAAAATTCGGCGGCGGCGTTTTCCCAGAGGGGAGCTCTTCAGGTGCCGCCGATTCGTGGTTGGAGCAATCAGAATCGACAGTCGACAGTGGGCGCCGGCCGATTTGATGGGTCGTCGGAGTTCCGTACGCCGTCGCGGCTTAGAAGTGAGTGTGGGGAAGACGGCGTCGTTTCGGTGAGTCATTCATCGTCTCCGAATTTTCGCCCGTAG 927 53.51 MFLSFSNNQNIKRITIHKSIPTGKKMKTSAGGEIVPVQGGHILRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKAKFAIDKLQELPPYFPIANGFADPNRKTGDGETESSEFDSQLQLPSAAGNFAPSLESFFPTSSATTSINFQGYPVDLILRPTDPVRDLALSLHNFHDSRLIPSEQDATPSPEDHQRLIADSIPAGYEGGDAGLWLQQPLIGQNSAAAFSQRGALQVPPIRGWSNQNRQSTVGAGRFDGSSEFRTPSRLRSECGEDGVVSVSHSSSPNFRP 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1344612 1346043 - Tan0001584.1 Tan02g0149 742775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0149 308 ProSiteProfiles TCP domain profile. 48 106 IPR017887 -
Tan02g0149 308 MobiDBLite consensus disorder prediction 257 273 - -
Tan02g0149 308 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 258 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Tan02g0149 308 MobiDBLite consensus disorder prediction 257 308 - -
Tan02g0149 308 Pfam TCP family transcription factor 47 116 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0149 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4342 Tan-Chr1:108372913 Tan02g0149 Tan-Chr2:1344612 6.10E-36 dispersed
Tan01g4343 Tan-Chr1:108372913 Tan02g0149 Tan-Chr2:1344612 6.10E-36 dispersed
Tan02g0149 Tan-Chr2:1344612 Tan03g2713 Tan-Chr3:80125507 7.40E-20 dispersed
Tan01g0851 Tan-Chr1:8256350 Tan02g0149 Tan-Chr2:1344612 5.50E-40 transposed
Tan02g0149 Tan-Chr2:1344612 Tan05g0714 Tan-Chr5:5078476 8.70E-37 wgd
Tan02g0149 Tan-Chr2:1344612 Tan05g2476 Tan-Chr5:75983643 2.50E-15 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26642 PF03634 TCP 2.20E-30 No_clan Tan TF