Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0189 ATGGACCGCCGTGTTCTTACTAACCCATTTCTCTCCGAGCAAGAAGATCCTGGAGCCACGTCGGACGACGGCCTGCCGGACTCCCCCTCCGACGGCAATGACTCTAAACCCGCCGTCGGCCCCCCGCCCAAAAAGAGTAGAAGGGGAGTGCAGAAAAGAGTGGTGTCCGTACCGATCGGTGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCGTGGGCTTGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTACCGATGTAGTAGCTCCAAGGGCTGCCCGGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATCACCTACGCTTTCGACCACAACCACCAACTCCCGCCCACCAAATCTCACCACCACCACAATTCCTCGCCGTGCTCCGTCGCGATCGCCGCCGCAGCCGCCGACGACTCGTCTCCGGGGAGCACAACGACGTCATCCTGCACTTCCTCCGGCGACCACACTAACGCCACTCCCACGTCGCCGGCGAAGTTCGAGGAGGCGGCGGCGGTTTTCTCGAGTCAACCGGAACTGGAACTCGGCGGCGACTTGCTGATGATAAAACCCTGCATAGGCGATTTTGGATGGTTTGCTGACGTGGCGTACGATAGAATTCTGGAGGGCCCGTTTGGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCGACAATAGGAGATGACGAGGACGAGTCGTTATTTGCGGATCTTGGGGAATTACCCGAAGGCTCTGTGGTATTCGGCCGGCGGCGAGCGGTCCAACCGGACGGACCGAACCGGAAATGTGGCAGAGTTTTAGACTGCTAG 882 58.16 MDRRVLTNPFLSEQEDPGATSDDGLPDSPSDGNDSKPAVGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPPTKSHHHHNSSPCSVAIAAAAADDSSPGSTTTSSCTSSGDHTNATPTSPAKFEEAAAVFSSQPELELGGDLLMIKPCIGDFGWFADVAYDRILEGPFGGGGDIFDDADVMVLSTIGDDEDESLFADLGELPEGSVVFGRRRAVQPDGPNRKCGRVLDC 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1645551 1648358 + Tan0016872.1 Tan02g0189 742815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0189 293 FunFam WRKY transcription factor 65 61 135 - -
Tan02g0189 293 MobiDBLite consensus disorder prediction 159 183 - -
Tan02g0189 293 MobiDBLite consensus disorder prediction 1 86 - -
Tan02g0189 293 Gene3D WRKY domain 62 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0189 293 SMART WRKY_cls 74 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0189 293 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0189 293 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0189 293 MobiDBLite consensus disorder prediction 156 183 - -
Tan02g0189 293 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 26 188 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Tan02g0189 293 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0189 Tan-Chr2:1645551 Tan03g2814 Tan-Chr3:81078287 2.60E-30 dispersed
Tan02g0189 Tan-Chr2:1645551 Tan05g2522 Tan-Chr5:76564847 1.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26645 PF03106 WRKY 1.10E-24 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0189 - - - 0.0