Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0199 ATGAGCAGTGTTTGTGCTGAGAATCAGAAATTTCAGTTTCAGTTTCAATTTCCTTCTTCGTCTTCTTGTTCTGATTTTGTTTCTGAGAGGTTTCCTTTTCTGAAGGACATTAACGTTCCGCCGAGGAAGCTTCTTGCGGTGCGACGAGATCAAAACGGTGAAATGTGTTCTGATTCGCCGCGATTTTCGTTTGCCGTTGAATCGCTTTTGCAGAAATTTTTGCCGTTCAACGGTGAGGATGAGGCGGAGGAGGACGGCGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTCAAGGTGAGGCGGTGTACTCGTAGTCGGAGCCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGGCGGGATCCTCGTAGGTTTCATTACTCCGGCACGATGTGTCCCGAGTTCCGGCGCGGTGGTTGCGTTCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCGCCGGTGAGTAATTTTCAAGGCGGCGGCGGCTCTTGTTCTTCGCCGAATAAGAAGAGTTCTAATCTCAGATCGGCTGCTGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGCGGAGCCGCCACCTCCTCCCCGACGTCGACGCTTTTCGGAATGTCTCATCTCTCTCCGCCGCACTCACCACCGCTCTCGCCGGGAAAACCTCGGTCAATGAATGGATTTTCGCCGATCTCGAGGTATAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCTATTGAATCCATGAATATCGACGACGCTAATGCCACTTTTGCCGCCCCCGCGACTGCTTCCGCCGCCATCCCCGCTCCTAGACCAACGCCTTGGATAGATGTTTCATCCCTCAACACTGAAGATCAACTGCAGTTTATTCTCTCGCCTTCCACTCCAAACATCTCCGCCGCATCGGCAAACTTTTCCGGCGAGAATAAAGCTAACGCCGACAATGGATGGACTGCCGCCTCCGGCCCCGATCTCGGATGGGTTAATGATCTGCTGATGTAA 1173 50.98 MSSVCAENQKFQFQFQFPSSSSCSDFVSERFPFLKDINVPPRKLLAVRRDQNGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCVRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSMNGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATFAAPATASAAIPAPRPTPWIDVSSLNTEDQLQFILSPSTPNISAASANFSGENKANADNGWTAASGPDLGWVNDLLM 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1713933 1715802 - Tan0005421.1 Tan02g0199 742825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0199 390 SMART c3hfinal6 133 159 IPR000571 GO:0046872(InterPro)
Tan02g0199 390 SMART c3hfinal6 168 191 IPR000571 GO:0046872(InterPro)
Tan02g0199 390 ProSiteProfiles Zinc finger C3H1-type profile. 134 160 IPR000571 GO:0046872(InterPro)
Tan02g0199 390 PANTHER UNKEMPT FAMILY MEMBER 60 354 IPR045234 -
Tan02g0199 390 FunFam Zinc finger CCCH domain-containing protein 66 91 159 - -
Tan02g0199 390 Gene3D - 133 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0445 Tan-Chr1:4128067 Tan02g0199 Tan-Chr2:1713933 9.40E-46 dispersed
Tan02g0199 Tan-Chr2:1713933 Tan08g0088 Tan-Chr8:805672 2.50E-57 dispersed
Tan02g0199 Tan-Chr2:1713933 Tan09g1181 Tan-Chr9:64142276 2.40E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26647 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0199 K23047 - csv:101211149 588.186