Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0208 ATGGCTTCGTTCCCGTACTCGTACACGTTCTCATTCACTAAAGTCTTAATCTTGTTGCTCCTTCAGTTATCTTCTATGTTTAACGGCCTGGCTGCCAAACATGGTGGCGGTGTCACTCATGATGACCACCACCACCACCATCGTGCTCGATCACCGAGTCCGAGTCCGAACCCGAACACAAACCCGAGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTAATTTACTCTGACCCAAAAAACCACACCACCAATTGGGTGGGGTCTTCAGTTTGCAACTACTTTGGAGTGTACTGTGCCCCATCTCTCGACGACCCAAATCTTCAAGTCGTCGCCGGAATCGATTTAAACCACGGCGACATTGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGACCTTGCTCTGCTTCATCTCAACAGCAACCGTTTCTGTGGCATTTTGCCTCAATCCTTAGCCAATTTATCTCTTCTCTTCGAACTTGATTTAAGCAATAACAGATTCGTTGGCCCTTTTCCGTCTGTTGTTCTTCATCTTCCAAAATTAACATATCTCGACCTTCGATTCAACGAATTTGAAGGCCCAATTCCCCCTGAACTCTTCAATAAAAGCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCTCGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACTAGTTTATCGGGCTGTTTGCCTCAAGAAATTGGGTTTTTATACAAATTGAAGGTTTTGGATGTGAGTTTTAACGAATTAGTGGGTCCTTTGCCTTATAGTTTAGCTGGGTTGGCTCAATTGGAGCAATTGAATTTGGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTCTCTGTAACCTTCCGAATTTGGAGAATGTGACGGTTTCTTACAATTACTTTTGTGAGGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGTCGGAATTGTTTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGCAGTGCGGTGGTTGAGCATCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGCAGTTATGGTTCTAGCATTGCGGCGGTTCCGGCTTCGACGCCCGTTTCTTCACCTTCTTCCGTTGTTGCCCCTACGCACTTGTGA 1266 45.97 MASFPYSYTFSFTKVLILLLLQLSSMFNGLAAKHGGGVTHDDHHHHHRARSPSPSPNPNTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGSSVCNYFGVYCAPSLDDPNLQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLTYLDLRFNEFEGPIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELVGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGLCNLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVEHPVDCFEHPCGGGGSYGSSIAAVPASTPVSSPSSVVAPTHL 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1755214 1756873 + Tan0012879.1 Tan02g0208 742834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0208 421 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 29 403 IPR051582 -
Tan02g0208 421 Pfam Leucine Rich Repeat 280 302 IPR001611 GO:0005515(InterPro)
Tan02g0208 421 Pfam Leucine Rich Repeat 304 326 IPR001611 GO:0005515(InterPro)
Tan02g0208 421 Gene3D Ribonuclease Inhibitor 232 355 IPR032675 -
Tan02g0208 421 Gene3D Ribonuclease Inhibitor 67 231 IPR032675 -
Tan02g0208 421 MobiDBLite consensus disorder prediction 37 62 - -
Tan02g0208 421 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Tan02g0208 421 Pfam Leucine rich repeat 138 195 IPR001611 GO:0005515(InterPro)
Tan02g0208 421 SUPERFAMILY L domain-like 67 341 - -
Tan02g0208 421 Pfam Leucine rich repeat N-terminal domain 69 102 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0208 Tan-Chr2:1755214 Tan10g0798 Tan-Chr10:6686244 8.50E-43 dispersed
Tan02g0208 Tan-Chr2:1755214 Tan09g1311 Tan-Chr9:65422738 3.70E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4848 . 44 390 Leucine-rich Repeat extension Gene Families AT1G62440 64.3 2.8e-55 214.5
Tan10g0798 . 45 370 Leucine-rich Repeat extension Gene Families AT1G62440 63.3 1.6e-50 198.7
Tan08g0179 . 71 240 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 4.6e-42 170.6
Tan09g1311 . 54 222 Leucine-rich Repeat extension Gene Families AT1G62440 68.6 1.5e-40 165.6
Tan09g1311 . 20 409 Leucine-rich Repeat extension Gene Families AT4G13340 73.7 2.6e-66 251.1
Tan08g0179 . 13 415 Leucine-rich Repeat extension Gene Families AT4G13340 70.2 3.8e-57 220.7
Tan10g0798 . 45 372 Leucine-rich Repeat extension Gene Families AT4G13340 70.5 6.0e-55 213.4
Tan01g4848 . 31 260 Leucine-rich Repeat extension Gene Families AT4G13340 61.2 1.1e-48 192.6
Tan06g2003 . 21 225 Leucine-rich Repeat extension Gene Families AT4G13340 64.9 5.1e-38 157.1
Tan09g1311 . 29 393 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 1.6e-69 261.2
Tan08g0179 . 46 414 Leucine-rich Repeat extension Gene Families AT3G24480 72.4 5.1e-63 239.6
Tan10g0798 . 45 372 Leucine-rich Repeat extension Gene Families AT3G24480 66.9 4.3e-54 209.9
Tan01g4848 . 30 260 Leucine-rich Repeat extension Gene Families AT3G24480 62.2 4.8e-53 206.5
Tan06g2003 . 30 397 Leucine-rich Repeat extension Gene Families AT3G24480 58.6 8.8e-39 159.1
Tan10g0798 . 15 371 Leucine-rich Repeat extension Gene Families AT3G22800 71.5 8.0e-74 275.4
Tan02g0208 . 61 390 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 2.0e-40 164.5
Tan01g4848 . 61 390 Leucine-rich Repeat extension Gene Families AT3G22800 58.0 2.0e-40 164.5
Tan09g1311 . 66 394 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 3.0e-36 150.6
Tan09g1311 . 40 398 Leucine-rich Repeat extension Gene Families AT5G25550 62.6 1.6e-39 161.4
Tan08g0179 . 57 237 Leucine-rich Repeat extension Gene Families AT5G25550 72.4 1.3e-38 158.3
Tan10g0798 . 11 371 Leucine-rich Repeat extension Gene Families AT5G25550 52.8 2.5e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28