Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0208 ATGGCTTCGTTCCCGTACTCGTACACGTTCTCATTCACTAAAGTCTTAATCTTGTTGCTCCTTCAGTTATCTTCTATGTTTAACGGCCTGGCTGCCAAACATGGTGGCGGTGTCACTCATGATGACCACCACCACCACCATCGTGCTCGATCACCGAGTCCGAGTCCGAACCCGAACACAAACCCGAGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTAATTTACTCTGACCCAAAAAACCACACCACCAATTGGGTGGGGTCTTCAGTTTGCAACTACTTTGGAGTGTACTGTGCCCCATCTCTCGACGACCCAAATCTTCAAGTCGTCGCCGGAATCGATTTAAACCACGGCGACATTGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGACCTTGCTCTGCTTCATCTCAACAGCAACCGTTTCTGTGGCATTTTGCCTCAATCCTTAGCCAATTTATCTCTTCTCTTCGAACTTGATTTAAGCAATAACAGATTCGTTGGCCCTTTTCCGTCTGTTGTTCTTCATCTTCCAAAATTAACATATCTCGACCTTCGATTCAACGAATTTGAAGGCCCAATTCCCCCTGAACTCTTCAATAAAAGCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCTCGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACTAGTTTATCGGGCTGTTTGCCTCAAGAAATTGGGTTTTTATACAAATTGAAGGTTTTGGATGTGAGTTTTAACGAATTAGTGGGTCCTTTGCCTTATAGTTTAGCTGGGTTGGCTCAATTGGAGCAATTGAATTTGGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTCTCTGTAACCTTCCGAATTTGGAGAATGTGACGGTTTCTTACAATTACTTTTGTGAGGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGTCGGAATTGTTTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGCAGTGCGGTGGTTGAGCATCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGCAGTTATGGTTCTAGCATTGCGGCGGTTCCGGCTTCGACGCCCGTTTCTTCACCTTCTTCCGTTGTTGCCCCTACGCACTTGTGA 1266 45.97 MASFPYSYTFSFTKVLILLLLQLSSMFNGLAAKHGGGVTHDDHHHHHRARSPSPSPNPNTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGSSVCNYFGVYCAPSLDDPNLQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLTYLDLRFNEFEGPIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELVGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGLCNLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVEHPVDCFEHPCGGGGSYGSSIAAVPASTPVSSPSSVVAPTHL 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1755214 1756873 + Tan0012879.1 Tan02g0208 742834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0208 421 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 29 403 IPR051582 -
Tan02g0208 421 Pfam Leucine Rich Repeat 280 302 IPR001611 GO:0005515(InterPro)
Tan02g0208 421 Pfam Leucine Rich Repeat 304 326 IPR001611 GO:0005515(InterPro)
Tan02g0208 421 Gene3D Ribonuclease Inhibitor 232 355 IPR032675 -
Tan02g0208 421 Gene3D Ribonuclease Inhibitor 67 231 IPR032675 -
Tan02g0208 421 MobiDBLite consensus disorder prediction 37 62 - -
Tan02g0208 421 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Tan02g0208 421 Pfam Leucine rich repeat 138 195 IPR001611 GO:0005515(InterPro)
Tan02g0208 421 SUPERFAMILY L domain-like 67 341 - -
Tan02g0208 421 Pfam Leucine rich repeat N-terminal domain 69 102 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0208 Tan-Chr2:1755214 Tan10g0798 Tan-Chr10:6686244 8.50E-43 dispersed
Tan02g0208 Tan-Chr2:1755214 Tan09g1311 Tan-Chr9:65422738 3.70E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0208 - - - 0.0