Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0231 ATGCAGCTCCGCCGTGGCCATGCTACATTCTCGTCTTTTGGGTACTTGTGGAGTGTGATAATGGTGGTGAATATGGTGGCAATGGGGAAGTTTCTTCGGGTCGAATCAGCTCTGCTTCGAAACCATACGTCAGCTCTGCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGCCCCGAAGGCGATGGCAGTGACGGTGGAGCATGTGGGTATGGTAGTTTGGTGGACGTGAAGCCATTCAAGGCGAGAGTAGGGGCAGTGAGCCCAGTCCTATTCAAGGACGGCGAAGGGTGCGGCGCATGCTACAAGGTCCGGTGCTTGGATCGAACCTTATGCTCCAAACGAGCCGTTACCATTATAGTTACCGACGAGTGTCCCGGTGGATATTGTGCCAATGGTCGCACCCACTTCGACCTTAGCGGAGCCGCCTTCGGTCGCATGGCCGTGGCTGGTGCCCACAGTCGTCTCCGTGACCGAGGCGAACTCTCCGTTATCTATAGACGAACTCCATGTTTGTATCGTGGGAAGAACATAGCCTTCCATGTGAATGAAGGTTCTACGGATCATTGGCTCTCGCTTTTGGTGGAGTTCGAGGATGGAGATGGAGATATTGGCTCTATGCAAATCAAACAAGCAAGTTCGAGGGAGTGGATGGAAATGGCACATGTGTGGGGCGCAACATGGTGCATAAATGGAGGGCCTTTAGAGGGTCCATTCTCAGTGAAGTTAACAACATTATCCACTGCCAAAACTCTTTCAGCCAGAGATGTTATTCCAAAGAATTGGTCTCCAAAGGCTACTTATACTTCTCGATTGAATTTTTTATAA 828 51.69 MQLRRGHATFSSFGYLWSVIMVVNMVAMGKFLRVESALLRNHTSALHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPVLFKDGEGCGACYKVRCLDRTLCSKRAVTIIVTDECPGGYCANGRTHFDLSGAAFGRMAVAGAHSRLRDRGELSVIYRRTPCLYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQASSREWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPKNWSPKATYTSRLNFL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2035752 2039423 + Tan0021234.1 Tan02g0231 742857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0231 275 CDD DPBB_EXPB_N 48 171 - -
Tan02g0231 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576(InterPro)
Tan02g0231 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Tan02g0231 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576(InterPro)
Tan02g0231 275 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576(InterPro)
Tan02g0231 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576(InterPro)
Tan02g0231 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576(InterPro)
Tan02g0231 275 PANTHER EXPANSIN-B3 30 274 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Tan02g0231 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 176 IPR007112 -
Tan02g0231 275 FunFam Expansin B3 34 172 - -
Tan02g0231 275 Pfam Lytic transglycolase 86 150 IPR009009 -
Tan02g0231 275 FunFam Beta-expansin 3 173 275 - -
Tan02g0231 275 Pfam Expansin C-terminal domain 178 259 IPR007117 -
Tan02g0231 275 SMART dpbb_1 84 166 IPR007112 -
Tan02g0231 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 270 IPR007117 -
Tan02g0231 275 SUPERFAMILY Barwin-like endoglucanases 42 175 IPR036908 -
Tan02g0231 275 Gene3D - 173 275 IPR036749 -
Tan02g0231 275 Gene3D - 33 171 IPR036908 -
Tan02g0231 275 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
Tan02g0231 275 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0231 275 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0231 275 PRINTS Major pollen allergen Lol pI signature 246 263 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0231 275 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0231 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0231 275 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0231 Tan-Chr2:2035752 Tan10g0038 Tan-Chr10:747853 5.70E-64 dispersed
Tan02g0231 Tan-Chr2:2035752 Tan02g0232 Tan-Chr2:2036472 1.90E-123 tandem
Tan07g1925 Tan-Chr7:71048553 Tan02g0231 Tan-Chr2:2035752 2.90E-22 transposed
Tan02g0231 Tan-Chr2:2035752 Tan05g0779 Tan-Chr5:5689316 4.00E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0231 K20628 - csv:101205324 472.626