Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0232 ATGATTTCAGGTGGAGCATGTGGGTATGGTAGTTTGGTGGACGTGAAGCCATTCAAGGCGAGAGTAGGGGCAGTGAGCCCAGTCCTATTCAAGGACGGCGAAGGGTGCGGCGCATGCTACAAGGTCCGGTGCTTGGATCGAACCTTATGCTCCAAACGAGCCGTTACCATTATAGTTACCGACGAGTGTCCCGGTGGATATTGTGCCAATGGTCGCACCCACTTCGACCTTAGCGGAGCCGCCTTCGGTCGCATGGCCGTGGCTGGTGCCCACAGTCGTCTCCGTGACCGAGGCGAACTCTCCGTTATCTATAGACGAACTCCATGTTTGTATCGTGGGAAGAACATAGCCTTCCATGTGAATGAAGGTTCTACGGATCATTGGCTCTCGCTTTTGGTGGAGTTCGAGGATGGAGATGGAGATATTGGCTCTATGCAAATCAAACAAGCAAGTTCGAGGGAGTGGATGGAAATGGCACATGTGTGGGGCGCAACATGGTGCATAAATGGAGGGCCTTTAGAGGGTCCATTCTCAGTGAAGTTAACAACATTATCCACTGCCAAAACTCTTTCAGCCAGAGATGTTATTCCAAAGAATTGGTCTCCAAAGGCTACTTATACTTCTCGATTGAATTTTTTATAA 642 49.84 MISGGACGYGSLVDVKPFKARVGAVSPVLFKDGEGCGACYKVRCLDRTLCSKRAVTIIVTDECPGGYCANGRTHFDLSGAAFGRMAVAGAHSRLRDRGELSVIYRRTPCLYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQASSREWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPKNWSPKATYTSRLNFL 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2036472 2039423 + Tan0021234.2 Tan02g0232 742858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0232 213 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 127 208 IPR007117 -
Tan02g0232 213 SUPERFAMILY Barwin-like endoglucanases 2 113 IPR036908 -
Tan02g0232 213 PANTHER EXPANSIN-B3 4 212 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Tan02g0232 213 SMART dpbb_1 22 104 IPR007112 -
Tan02g0232 213 Pfam Lytic transglycolase 24 89 IPR009009 -
Tan02g0232 213 Pfam Expansin C-terminal domain 116 197 IPR007117 -
Tan02g0232 213 SUPERFAMILY PHL pollen allergen 114 208 IPR036749 -
Tan02g0232 213 Gene3D - 1 109 IPR036908 -
Tan02g0232 213 Gene3D - 111 213 IPR036749 -
Tan02g0232 213 PRINTS Expansin/Lol pI family signature 97 113 IPR007118 GO:0005576(InterPro)
Tan02g0232 213 PRINTS Expansin/Lol pI family signature 155 169 IPR007118 GO:0005576(InterPro)
Tan02g0232 213 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Tan02g0232 213 PRINTS Expansin/Lol pI family signature 3 21 IPR007118 GO:0005576(InterPro)
Tan02g0232 213 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576(InterPro)
Tan02g0232 213 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 4 114 IPR007112 -
Tan02g0232 213 FunFam Beta-expansin 3 111 213 - -
Tan02g0232 213 PRINTS Major pollen allergen Lol pI signature 64 79 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0232 213 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0232 213 PRINTS Major pollen allergen Lol pI signature 134 149 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0232 213 PRINTS Major pollen allergen Lol pI signature 86 101 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0232 213 PRINTS Major pollen allergen Lol pI signature 24 35 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0232 213 PRINTS Major pollen allergen Lol pI signature 184 201 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0232 Tan-Chr2:2036472 Tan05g0779 Tan-Chr5:5689316 5.70E-104 dispersed
Tan02g0231 Tan-Chr2:2035752 Tan02g0232 Tan-Chr2:2036472 1.90E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0232 K20628 - csv:101205324 408.683