Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0246 ATGGGTTGGAAGAGATCTTCGAGGAATGACAATTTGAGGATCTGGGTTCAGGTTTTTGTCGGATTCGTGATCTGCGCAGCACAAGTTCTTTTCGGAATTACGAATCCAGGCGATTTTGCTGCTATCAGTAGCTTACATACCGCACTGGGACTCCCCAGTCTTCCTGGATGGGGCACTGGGCAAGACCCATGTGGAGATGCATGGCAGGGTGTTGTATGTAATGATTCAAACATCATTAAAATAGTTGTTAATGCTGCCAATTTGGGAGGTGAACTGGGTGACAACTTGGGAATGTTTTCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATTCCATCCAGTTTGCCCGTTACCATGCAGAACCTTTTTCTTTCAGCTAATGAGTTCACTGGAAGCATTCCGAGTTCATTATCATCTTTGATTCAACTGACAGCCATGTCGTTGAATGATAACAAATTAAGTGGAGAAATACCAGATTCCTTTCAATCCGTTACACAATTGGTCAATTTGGATTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTATAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAATAATCAGCTATCAGGGACCCTTGATGCTCTACAAGACCTTCCACTAAAAGACTTGAACATAGAGAACAATCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGGCTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCTCCTCCTCCTCCTTCTGTATCTCCACCATCAAAGCCAGCACCAGCACCACCCATTTCTGGAGCTGGAGCACCACCAGTTTCTGGAGCACCACCATCTTCTCAACAGAAACCTAAGAAACAGGCTGATGGACCATCCGCATCTGAGGAATCCAGTACTGGAAGAAATAAGAAAAGCACTAAAAGGGTTGTGTTGATAACACTTGCAGTGGTTTTGTCATTCATAATTTTGGTTTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGAACAGTTGATAGTATTTCCAAGCGACATCATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAATGCTGGAAATGAAGGATCCATACCCCATACAACTGATCAGATACCTAAAGTTCCAAAAGAGGCCGTTGTGAGGTCGAAGCAGGAAACTCAAACAGAGGCTCAGAAGGTTCCAAAAACTCATGAAGAGAGAGAGAGAAACGTGTCAAGAATGAGCGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCTCCCCCTCCCCCACCACCTCCCCCACCCCCTCCCCCTCCACCACCTCCTGTTGAAGAGGTCACTGCCGTGCCCATTGTTCCACCCGAAGTTCCTCCCTTGAAGCCTCCCACCAAACATAGAATTACCTCAACTTTTGCAAAATCTTTCACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCGCAAGAAAATATTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGCTTCCCAGTGGGAAGCTACTGGCGGTCAAGAAACTGGATAAAAGAGCATTCAGTCAGCAAAAGGACGATGAATTTCTTGAGCTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTAGTGGATCATTGCAGGATGCACTGCACTTAGACGAAGAGTTCAGAAAGAAACTTTCTTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGATGATTTTTCAGTGCGTGTTTCAGATTGTGGTCTGGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATATGGTTACGGAGCGCCAGAATTCGAATCGGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAAAACAAGGACCCGAGGTGAGCAATTTTTAGTCAGATGGGCAATTCCACAGCTTCACGACATAGAGGCATTGACAAGCATGGTCGATCCTTCACTGAATGGTCGATACCCTGCCAAATCCTTGTCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCAACCGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACATGGCAGTGGTTCAAGTGAAGGTTGA 2370 44.68 MGWKRSSRNDNLRIWVQVFVGFVICAAQVLFGITNPGDFAAISSLHTALGLPSLPGWGTGQDPCGDAWQGVVCNDSNIIKIVVNAANLGGELGDNLGMFSSIQTIDLSNNHIGGSIPSSLPVTMQNLFLSANEFTGSIPSSLSSLIQLTAMSLNDNKLSGEIPDSFQSVTQLVNLDLSNNNLSGPLPPSISNLLALTTLHLQNNQLSGTLDALQDLPLKDLNIENNLFSGPIPEKLLAIPNFRKDGNPFNSSVSPPPPPSVSPPSKPAPAPPISGAGAPPVSGAPPSSQQKPKKQADGPSASEESSTGRNKKSTKRVVLITLAVVLSFIILVLACVLFMPRCRRRTVDSISKRHHQIGAYRGERENAGNEGSIPHTTDQIPKVPKEAVVRSKQETQTEAQKVPKTHEERERNVSRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPPVEEVTAVPIVPPEVPPLKPPTKHRITSTFAKSFTIASLQQYTNSFSQENILGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSSGSLQDALHLDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDFSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDKTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLLNMIRREPHGSGSSEG 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2140398 2148760 + Tan0006063.1 Tan02g0246 742872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0246 789 MobiDBLite consensus disorder prediction 251 279 - -
Tan02g0246 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 577 786 - -
Tan02g0246 789 SUPERFAMILY Protein kinase-like (PK-like) 474 773 IPR011009 -
Tan02g0246 789 SUPERFAMILY L domain-like 50 241 - -
Tan02g0246 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 35 260 - -
Tan02g0246 789 MobiDBLite consensus disorder prediction 283 307 - -
Tan02g0246 789 Pfam Leucine Rich Repeat 148 168 IPR001611 GO:0005515(InterPro)
Tan02g0246 789 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Tan02g0246 789 Pfam Leucine Rich Repeat 125 145 IPR001611 GO:0005515(InterPro)
Tan02g0246 789 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Tan02g0246 789 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 470 576 - -
Tan02g0246 789 MobiDBLite consensus disorder prediction 247 312 - -
Tan02g0246 789 Pfam Protein tyrosine and serine/threonine kinase 501 773 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan02g0246 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 38 778 IPR046959 -
Tan02g0246 789 ProSiteProfiles Protein kinase domain profile. 499 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g0246 789 MobiDBLite consensus disorder prediction 388 413 - -
Tan02g0246 789 SUPERFAMILY Formin homology 2 domain (FH2 domain) 443 449 - -
Tan02g0246 789 Gene3D Ribonuclease Inhibitor 40 256 IPR032675 -
Tan02g0246 789 Gene3D Phosphorylase Kinase; domain 1 472 576 - -
Tan02g0246 789 Gene3D Transferase(Phosphotransferase) domain 1 578 784 - -
Tan02g0246 789 MobiDBLite consensus disorder prediction 437 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0246 Tan-Chr2:2140398 Tan02g0248 Tan-Chr2:2140398 0.00E+00 dispersed
Tan02g0246 Tan-Chr2:2140398 Tan02g0247 Tan-Chr2:2140398 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan05g2855 . 388 680 Strubbelig Receptor Gene Family AT1G11130 53.7 2.5e-84 310.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan04g2828 . 4 710 Strubbelig Receptor Gene Family AT1G53730 61.7 1.8e-213 740.0
Tan06g0048 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.3 4.8e-195 678.7
Tan11g2046 . 24 671 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-145 512.7
Tan04g2828 . 11 714 Strubbelig Receptor Gene Family AT3G14350 51.9 2.4e-183 639.8
Tan06g0048 . 10 702 Strubbelig Receptor Gene Family AT3G14350 57.4 3.3e-177 619.4
Tan05g2855 . 336 710 Strubbelig Receptor Gene Family AT4G22130 82.2 4.8e-174 608.6
Tan04g2828 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-119 426.8
Tan06g0048 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.5 4.5e-116 416.0
Tan02g0246 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0247 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0248 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0249 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan11g2046 . 368 685 Strubbelig Receptor Gene Family AT4G22130 56.3 1.2e-100 364.8
Tan03g2439 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2440 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2441 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67179 PF07714 PK_Tyr_Ser-Thr 4.70E-42 CL0016 Tan PK