Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0260 ATGGGAGCACAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAATTAATTTATATCCTACAGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTCGATGAAAGAATTAGTTCATTTGCCGAACAAAAATTCCAAAGAGATGGTATCGATGTGCACACAGGATGTCGAGTTATCAGTGTATCTGATAAGGAAATTAAGATGAAGGTGAAATCAACTGGAGAAGTCTGTTCAGTACCGCATGGACTAATTGTGTGGTCTACAGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGTCAGGGTAGTAGACGCATTCTAGCTACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCGGCCATATTTAAAGCTGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTAGACGATATCCTCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAGCATCTACGCGATGTAAAGGATCTATTGAAAGATTCTCAGGGACATGAGAACGAAGTAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCGGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAATCGTAGGGAGCATTGCAGTGAGAATCCTGAGGGCCCTCGACGTTTTAAGAGTTCTGGGCGTCATCAATTTCTTCCCTTTAGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCTGCTGCAGAACTCCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAGTGGCTCTGGTATTCTGTATACGCAAGCAAGCAGGTCAGCTGGCGCACAAGGTATTTAGTGGTATCAGATTGGACAAGAAAGTTTATATTTGGCAGAGACTCAAGCCGCATTTGA 1230 43.09 MGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLINLYPTVKDLVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVHTGCRVISVSDKEIKMKVKSTGEVCSVPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDILIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEVDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCSENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2214707 2219132 + Tan0004135.1 Tan02g0260 742886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0260 409 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 257 408 - -
Tan02g0260 409 Gene3D - 257 408 - -
Tan02g0260 409 Gene3D - 1 234 - -
Tan02g0260 409 ProSiteProfiles EF-hand calcium-binding domain profile. 211 246 IPR002048 GO:0005509(InterPro)
Tan02g0260 409 SUPERFAMILY EF-hand 164 291 IPR011992 -
Tan02g0260 409 Pfam Pyridine nucleotide-disulphide oxidoreductase 1 216 IPR023753 GO:0016491(InterPro)
Tan02g0260 409 SMART efh_1 215 243 IPR002048 GO:0005509(InterPro)
Tan02g0260 409 PANTHER NADH DEHYDROGENASE 1 409 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Tan02g0260 409 SUPERFAMILY FAD/NAD(P)-binding domain 54 208 IPR036188 -
Tan02g0260 409 Pfam NDH2 C-terminal domain 344 405 IPR054585 -
Tan02g0260 409 ProSitePatterns EF-hand calcium-binding domain. 224 236 IPR018247 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0260 Tan-Chr2:2214707 Tan05g0490 Tan-Chr5:3371980 6.50E-48 dispersed
Tan02g0260 Tan-Chr2:2214707 Tan05g0812 Tan-Chr5:6160687 6.80E-170 wgd
Tan02g0260 Tan-Chr2:2214707 Tan05g3212 Tan-Chr5:84226030 1.80E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0260 K03885 - csv:101203130 792.727