Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0328 ATGCCAGCCGGAATGATGATTCCAGCCAGAAACACGCCGTCGATGATCGGAAGAAATGGAAATGTTGGTGTTTTTGGCTCTCCGGCCAGCCTTGTTCTTGGTCAGGCAAATATGATGGAAGGGGGGCAGCTACATGGATTAGATATGGGACAAAGTGCTTTGCCAGAAAGTGATTTTGGAAGAATGAGATCAGAAGCAGAAGATTTTGACAGTGTAACGAAATCAAGCAGCGAGAACCACGAGGTTGGTTCTGGTGACGAACAAGACCACCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCACCAAATTCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAGCTGGGTTTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGGACTCAAATGAAGACTCATCATGAGCGCCATGAAAACACCCAGCTCAGAACAGAAAATGAAAAGCTTAGAGCCGATAATATGAGATACAGAGAAGCTCTCAGTAATGCCACGTGTCCCAATTGCGGAGGCCCGACCGCCATTGGAGAGATGTCCTTTGATGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCAATAGCAGCAAAGTACGTTGGAAAGCCAGTTTCAAGCTACCCTCTTCTTTCCCCACCAATTCCTTCACGTCCTCTAGAACTCGGAATGGGAAGCTACGATTCAAGCATCGGAGCCGGTGGGGACATGTACGGGGCAGCCGACCTTCTGAGGACGATAAGCGCACCATCAGAGGCCGATAAACCCATAATCATCGAGCTCGCGGTTGCAGCCATGGAGGAACTAGTCCGAATGGTTCAGATGGGCGAGCCCTTGTGGATGACGGCTCTTGATGGCTCAACGGCTGTGCTTAATGAAGATGAATATGTTAGAACCTTTCCTAGAGGAATTGGACCTAAGCCCTCTGGGTTTAGCTGTGAAGCTTCTCGTGCTACTGCTGTTGTCATTATGAACCATATTAACCTCGTTGAGATGCTCATGGATGTGAATCAGTGGTCATCCGTATTCACTGGGATTGTCTCAAGAGCAATGACATTAGAAGTTTTGTCAACGGGCGTTGCTGGAAATTACAACGGAGCATTACAAGTGATGACAACCGAATTGCAAGTGCCTTCGCCACTGGTTCCAACTCGGGAGAGCTATTTCGTAAGGTACTGTAAACAACATGGAGAGGGAACTTGGGCTGTGGTCGACGTGTCGTTGGACACTTTACGCCCTGCTCCTGCACTTAGATGTAGAAGAAGGCCTTCCGGCTGTTTAATCCAAGAAATGCCTAATGGCTATTCTAAGGTTACGTGGGTGGAGCATGTTGAGGTGGACGATCGTGGGGTCCACAGTTTGTACAATCAGCTTGTTAGCTCTGGCCACGCGTTCGGCGCAAAGCGGTGGATTGCCACGTTGGATCGTCAGTGTGAACGGCTCGCCAGCGCCATGGCCACAAGTATTCCGACGGGTGATGCTGGTGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGCGGAGTGAGTGCGTCGACGACGCACACGTGGACAACACTGTCGGGAACTGGAGCTGATGACGTCAGAGTCATGACACGTAAGAGCGTTGACGATCCTGGCAGGCCACCTGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGCTGCCTGTTCCTCCTAAAAGAGTCTTCGATTTTCTCAGGGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTGCAAGAAATGGCTCACATTGCCAATGGCCGTGACACTGGCAACTCTGTCTCATTACTACGAGTAAACAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGCAGCACAGATCAAACGGCGGCGTTTGTGATCTACGCGCCAGTGGACATTGTGGCCATCAACGTGGTGCTCAACGGCGGAGATCCCGATTATGTCGCCCTTCTCCCCTCTGGATTTGCCATTCTTCCCGATGGATCAGCCGCGTCCGGCGGCGGAAGTGGCGGCGTAAACGGCGTCGCCGAACATGGGTCCGGCGGATCGCTTTTAACAGTTGCATTTCAGATTTTGGTTGACTCGGTTCCCACGGCTAAACTTTCTCTCGGGTCAGTTGCAACGGTCAACAATCTCATTGCCTGTACCGTTGAGAGGATTAAAGCCTCTTTGTCATGTGAGAATCCATGA 2310 50.0 MPAGMMIPARNTPSMIGRNGNVGVFGSPASLVLGQANMMEGGQLHGLDMGQSALPESDFGRMRSEAEDFDSVTKSSSENHEVGSGDEQDHQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSSYPLLSPPIPSRPLELGMGSYDSSIGAGGDMYGAADLLRTISAPSEADKPIIIELAVAAMEELVRMVQMGEPLWMTALDGSTAVLNEDEYVRTFPRGIGPKPSGFSCEASRATAVVIMNHINLVEMLMDVNQWSSVFTGIVSRAMTLEVLSTGVAGNYNGALQVMTTELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDTLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESSTDQTAAFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGSAASGGGSGGVNGVAEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENP 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2703797 2715657 - Tan0007987.1 Tan02g0328 742954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0328 769 SMART START_1 284 504 IPR002913 GO:0008289(InterPro)
Tan02g0328 769 MobiDBLite consensus disorder prediction 64 93 - -
Tan02g0328 769 CDD START_ArGLABRA2_like 279 503 - -
Tan02g0328 769 Gene3D - 80 169 - -
Tan02g0328 769 SUPERFAMILY Bet v1-like 523 761 - -
Tan02g0328 769 CDD homeodomain 95 153 IPR001356 GO:0003677(InterPro)
Tan02g0328 769 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan02g0328 769 SUPERFAMILY Bet v1-like 277 506 - -
Tan02g0328 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 79 767 IPR042160 -
Tan02g0328 769 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677(InterPro)
Tan02g0328 769 FunFam Homeobox-leucine zipper protein GLABRA 2 284 503 - -
Tan02g0328 769 ProSiteProfiles START domain profile. 275 507 IPR002913 GO:0008289(InterPro)
Tan02g0328 769 Coils Coil 158 178 - -
Tan02g0328 769 SMART HOX_1 93 156 IPR001356 GO:0003677(InterPro)
Tan02g0328 769 Pfam Homeodomain 95 150 IPR001356 GO:0003677(InterPro)
Tan02g0328 769 Gene3D - 315 501 IPR023393 -
Tan02g0328 769 MobiDBLite consensus disorder prediction 64 104 - -
Tan02g0328 769 Pfam START domain 285 504 IPR002913 GO:0008289(InterPro)
Tan02g0328 769 FunFam Homeobox-leucine zipper protein HDG1 82 168 - -
Tan02g0328 769 SUPERFAMILY Homeodomain-like 82 151 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4523 Tan-Chr1:110922333 Tan02g0328 Tan-Chr2:2703797 5.50E-109 dispersed
Tan02g0328 Tan-Chr2:2703797 Tan05g3114 Tan-Chr5:83299086 1.10E-277 dispersed
Tan01g0273 Tan-Chr1:2316276 Tan02g0328 Tan-Chr2:2703797 7.30E-197 transposed
Tan04g2148 Tan-Chr4:77396112 Tan02g0328 Tan-Chr2:2703797 1.70E-168 transposed
Tan05g3373 Tan-Chr5:85543244 Tan02g0328 Tan-Chr2:2703797 1.70E-192 transposed
Tan06g2109 Tan-Chr6:69929122 Tan02g0328 Tan-Chr2:2703797 4.00E-225 transposed
Tan07g2005 Tan-Chr7:71725670 Tan02g0328 Tan-Chr2:2703797 1.90E-179 transposed
Tan02g0328 Tan-Chr2:2703797 Tan05g0866 Tan-Chr5:6853727 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26664 PF01852 START 2.60E-58 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0328 K09338 - csv:101219415 1332.78