Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0331 ATGAGAAAGTTTGCTGCTCTGCTGCTGCTGCGTACTTTGATATGGCTGTTTCTCACTGGTCCGATCTGGTGCCAAAAGCCTGCTGTGGTAAATATTGGTGCGGTTTTTACTTTCAATTCGGTTATTGGTAGAGCAGCAAAGCCGGCGATGCAAGCAGCAATCGCCGACATAAACGCCGACCCCAACATCCTGAATGGCACAAAGCTGAACTTCCTGATGGAGGACTCTAATTGCAGCGGCTTCTTGGCCTCCGTTGAAGCTTTGCAGTTATTTGAGAAAGAGATTGTGGCCGTCATCGGCCCACAATCCTCTGTGGCGGCTCATGTGATTTCTCAGATCGTTAATGGTCTACAAGTTCCTCAATTATCATACGGTGCCACTGATCCAACGTTGTCAACTCTTCAGCTCCCATTTTTCTTCCGAATCACTTTAAGCGACTCGTACCAAATGGCTGCCATGGCTGACTTGATTGATTATTATGGGTGGAAAGAGGTCATCGCTATATTTTTGGATGATGATTATGGGAGAAATGGGATATCTTCTTTGGGTGATGAACTTCACAAGAAGATGTGTCGTATTTCTCACGTTTTCGCCTTGCCTTCTCTGGTTAATCTTACTAAGATCACGGAGATACTTAATCATTCTAAATTGCTTGGTCCTCGTGTTTATGTGGTGCACGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATCGCCCATAAACTTGGTATGCTTACCAGCAATTACGTTTGGTTTGCAACTGATTGGCTTGCCACAACTCTAGATTCTTTTTCACCAACAGATCGTGCTTCCCTTGATACACTTAATGGGGTAGTGGGGCTACGCCCACATACTCCAGAGTCTAAAGGAAAGAGGGATTTGTTGCATCGGTTGACCAATTCTGCGTTGAATGTTTATGGACTCTACGCTTATGATTCAGTATGGGTTGTTGCAAAGGCAGTCGATAAGTTTCTCAAAGAAAATGGTAATATAACCTTTTCATCCACAGGTAAAGTATTTGGCTCTAATGCAAGTGGAATTCAACTGGGAAGGCTTAAAGTGTTTGATGGCGGAAGTGATCTGCTTAAAGTTATTAAGCAAACAAATTACACTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGACAGAAATATTATGAACGGTAGCTACGATGTGATTAATATTGACCAAAAGGAAATTCGTACGGTGGGCTATTGGTCTAATTACTCGAGATTCTCTGTTTCACCACCAGAAGCTTTGACAGTGAAACAAGAGAATTTCTCCTTAGATCAGAAACTTGACAATGTAGTTTGGCCTGGTGGAAAATCAGAATTACCACGGGGTTGGGTGATTGCAGACGCTGGAAAACCCCTAAGAATTGCATTCCCGAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAATAACACCGATAGCGTTCAAGGATACGTTATTGATATTTTCAAAGCAGCACTCAAGCTTATTCCATATGATGTTCCTTACAAATTCGTGCCGTTTGGGGATGGTCAAATCAATCCCAGTTATGATGAACTTGTTCAGTCGGTTGCAAATAATGTGTTTGATGCAGCTGTTGGGGACATTGCCATTGTTACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACAACTACTGGGCTTATCATAGTTGCCCCAGTTCAAAATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTTCAGCGGAGATGTGGTGTGTGACAGCAGTTTCTTTTGTGATTATTGGGATTGTTATTTGGATGCTTGAACACCGAATCAACGACCATTTTCGAGGGCCTCCAAAGAGGCAGATTATCACAATGTGTCTGTTCAGCTTTTCCACTCTTTTCAAGGCAAATCAAGAAGCAACAATTAGCCCACTTTCACGACTGGTGATGTTGGTGTGGCTGTTCTTATTGTTGGTAATAACGTCAAGCTACACAGCAAGTTTGACATCAATACTAACAATTCAACAACTTTGGTCGCCAATACGTGGAATTGATGAGTTGGTTGCAAGTAATTTGCCGATTGGATATCAGGTAGGATCCTTTGCTTACGACTATCTGACACAGAGCCTTTTCATACCACGTTCCAGACTAGTGAAGCTGTACGACCCTGATGATTACGAGAGAGCACTGCGGCTCGGTCCCAACGGAGGCGGTGTGGCGGCTATCATTGATGAACTTCCATATTTGGAGTTTTTTCTCTCTAAGACCAAAGAATTTGGAATGATTGGGCAAACTTTTACCAGAAGCGGATGGGGATTTGCTTTTCAGCGAGGATCTCGACTTGCAGTTGATATGTCAACTGCACTTTTGAAACTTTCTGAGAGTGGAAAGCTTCAAGAGATACACGACACTTGGTTCTGTAAGCTTGGTTGTCCTGGGCAGCGGGGAGGAAAATCGGAGCCAGACCAACTTCAATTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTCGCTGCACTTTTTGTGTTTCTTCTAAGACTAATTCACCAGTATATCCGCTATCAACGACATCATCGTCGTTCAGAGGTAGTCTCATCGTCCCCCGTTTCATCAAACATAGGCTGTACTCGGACCATTCAAAGCTTTATACGGTTTATTGATGAGAAGGAAGAAGCCATAAAAAGCTTCTTTAGAGCAGCACATTTACATGGTGCTCAAAATGGGGACCAACACCAGAAACAATCCGGAGGGACAAAGGAGAAGGCTGATTCAGAGGTACAGCTGGGGACCACGGGTATGAATCGAGGATAG 2799 43.12 MRKFAALLLLRTLIWLFLTGPIWCQKPAVVNIGAVFTFNSVIGRAAKPAMQAAIADINADPNILNGTKLNFLMEDSNCSGFLASVEALQLFEKEIVAVIGPQSSVAAHVISQIVNGLQVPQLSYGATDPTLSTLQLPFFFRITLSDSYQMAAMADLIDYYGWKEVIAIFLDDDYGRNGISSLGDELHKKMCRISHVFALPSLVNLTKITEILNHSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLATTLDSFSPTDRASLDTLNGVVGLRPHTPESKGKRDLLHRLTNSALNVYGLYAYDSVWVVAKAVDKFLKENGNITFSSTGKVFGSNASGIQLGRLKVFDGGSDLLKVIKQTNYTGLSGRIQFGEDRNIMNGSYDVINIDQKEIRTVGYWSNYSRFSVSPPEALTVKQENFSLDQKLDNVVWPGGKSELPRGWVIADAGKPLRIAFPKRASFVDFVTQVNNTDSVQGYVIDIFKAALKLIPYDVPYKFVPFGDGQINPSYDELVQSVANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVQNSKSSAWVFLKPFSAEMWCVTAVSFVIIGIVIWMLEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLWSPIRGIDELVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLYDPDDYERALRLGPNGGGVAAIIDELPYLEFFLSKTKEFGMIGQTFTRSGWGFAFQRGSRLAVDMSTALLKLSESGKLQEIHDTWFCKLGCPGQRGGKSEPDQLQLISFWGLYLLCGIISLAALFVFLLRLIHQYIRYQRHHRRSEVVSSSPVSSNIGCTRTIQSFIRFIDEKEEAIKSFFRAAHLHGAQNGDQHQKQSGGTKEKADSEVQLGTTGMNRG 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2735954 2743859 - Tan0008956.1 Tan02g0331 742957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0331 932 FunFam Glutamate receptor 569 699 - -
Tan02g0331 932 Pfam Ligand-gated ion channel 799 830 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0331 932 CDD PBP1_GABAb_receptor_plant 31 416 IPR044440 -
Tan02g0331 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Tan02g0331 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Tan02g0331 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Tan02g0331 932 Gene3D - 730 763 - -
Tan02g0331 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 877 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan02g0331 932 Pfam Receptor family ligand binding region 46 396 IPR001828 -
Tan02g0331 932 Pfam Bacterial extracellular solute-binding proteins, family 3 471 576 IPR001638 -
Tan02g0331 932 PIRSF IGluLR_plant 1 927 IPR017103 -
Tan02g0331 932 MobiDBLite consensus disorder prediction 901 932 - -
Tan02g0331 932 Gene3D - 764 798 - -
Tan02g0331 932 Gene3D - 454 568 - -
Tan02g0331 932 SMART GluR_14 459 800 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0331 932 FunFam Glutamate receptor 695 802 - -
Tan02g0331 932 FunFam Glutamate receptor 145 313 - -
Tan02g0331 932 Gene3D - 569 701 - -
Tan02g0331 932 SUPERFAMILY Periplasmic binding protein-like II 437 798 - -
Tan02g0331 932 CDD GluR_Plant 456 798 - -
Tan02g0331 932 SUPERFAMILY Periplasmic binding protein-like I 24 450 IPR028082 -
Tan02g0331 932 Gene3D - 49 387 - -
Tan02g0331 932 Gene3D - 145 410 - -
Tan02g0331 932 FunFam Glutamate receptor 453 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0331 Tan-Chr2:2735954 Tan02g0333 Tan-Chr2:2735954 0.00E+00 dispersed
Tan02g0331 Tan-Chr2:2735954 Tan02g0332 Tan-Chr2:2735954 0.00E+00 tandem
Tan02g0331 Tan-Chr2:2735954 Tan05g0868 Tan-Chr5:6890518 1.60E-259 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0331 K05387 - csv:101203158 1467.21