Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0334 ATGAGAAAGTTTGCTGCTCTGCTGCTGCTGCGTACTTTGATATGGCTGTTTCTCACTGGTCCGATCTGGTGCCAAAAGCCTGCTGTGGTAAATATTGGTGCGGTTTTTACTTTCAATTCGGTTATTGGTAGAGCAGCAAAGCCGGCGATGCAAGCAGCAATCGCCGACATAAACGCCGACCCCAACATCCTGAATGGCACAAAGCTGAACTTCCTGATGGAGGACTCTAATTGCAGCGGCTTCTTGGCCTCCGTTGAAGCTTTGCAGTTATTTGAGAAAGAGATTGTGGCCGTCATCGGCCCACAATCCTCTGTGGCGGCTCATGTGATTTCTCAGATCGTTAATGGTCTACAAGTTCCTCAATTATCATACGGTGCCACTGATCCAACGTTGTCAACTCTTCAGCTCCCATTTTTCTTCCGAATCACTTTAAGCGACTCGTACCAAATGGCTGCCATGGCTGACTTGATTGATTATTATGGGTGGAAAGAGGTCATCGCTATATTTTTGGATGATGATTATGGGAGAAATGGGATATCTTCTTTGGGTGATGAACTTCACAAGAAGATGTGTCGTATTTCTCACGTTTTCGCCTTGCCTTCTCTGGTTAATCTTACTAAGATCACGGAGATACTTAATCATTCTAAATTGCTTGGTCCTCGTGTTTATGTGGTGCACGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATCGCCCATAAACTTGGTATGCTTACCAGCAATTACGTTTGGTTTGCAACTGATTGGCTTGCCACAACTCTAGATTCTTTTTCACCAACAGATCGTGCTTCCCTTGATACACTTAATGGGGTAGTGGGGCTACGCCCACATACTCCAGAGTCTAAAGGAAAGAGGGATTTGTTGCATCGGTTGACCAATTCTGCGTTGAATGTTTATGGACTCTACGCTTATGATTCAGTATGGGTTGTTGCAAAGGCAGTCGATAAGTTTCTCAAAGAAAATGGTAATATAACCTTTTCATCCACAGGTAAAGTATTTGGCTCTAATGCAAGTGGAATTCAACTGGGAAGGCTTAAAGTGTTTGATGGCGGAAGTGATCTGCTTAAAGTTATTAAGCAAACAAATTACACTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGACAGAAATATTATGAACGGTAGCTACGATGTGATTAATATTGACCAAAAGGAAATTCGTACGGTGGGCTATTGGTCTAATTACTCGAGATTCTCTGTTTCACCACCAGAAGCTTTGACAGTGAAACAAGAGAATTTCTCCTTAGATCAGAAACTTGACAATGTAGTTTGGCCTGGTGGAAAATCAGAATTACCACGGGGTTGGGTGATTGCAGACGCTGGAAAACCCCTAAGAATTGCATTCCCGAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAATAACACCGATAGCGTTCAAGGATACGTTATTGATATTTTCAAAGCAGCACTCAAGCTTATTCCATATGATGTTCCTTACAAATTCGTGCCGTTTGGGGATGGTCAAATCAATCCCAGTTATGATGAACTTGTTCAGTCGGTTGCAAATAATGTGTTTGATGCAGCTGTTGGGGACATTGCCATTGTTACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACAACTACTGGGCTTATCATAGTTGCCCCAGTTCAAAATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTTCAGCGGAGATGTGGTGTGTGACAGCAGTTTCTTTTGTGATTATTGGGATTGTTATTTGGATGCTTGAACACCGAATCAACGACCATTTTCGAGGGCCTCCAAAGAGGCAGATTATCACAATGTGTCTGTTCAGCTTTTCCACTCTTTTCAAGGCAAATCGTAAGTCCTTTACTTTTCAGAGCTCCTTATCTATATATATATTCATCTCTTTTTTTCCTTTTCGAAATGAAGTGCTTGTCTAA 1971 41.86 MRKFAALLLLRTLIWLFLTGPIWCQKPAVVNIGAVFTFNSVIGRAAKPAMQAAIADINADPNILNGTKLNFLMEDSNCSGFLASVEALQLFEKEIVAVIGPQSSVAAHVISQIVNGLQVPQLSYGATDPTLSTLQLPFFFRITLSDSYQMAAMADLIDYYGWKEVIAIFLDDDYGRNGISSLGDELHKKMCRISHVFALPSLVNLTKITEILNHSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLATTLDSFSPTDRASLDTLNGVVGLRPHTPESKGKRDLLHRLTNSALNVYGLYAYDSVWVVAKAVDKFLKENGNITFSSTGKVFGSNASGIQLGRLKVFDGGSDLLKVIKQTNYTGLSGRIQFGEDRNIMNGSYDVINIDQKEIRTVGYWSNYSRFSVSPPEALTVKQENFSLDQKLDNVVWPGGKSELPRGWVIADAGKPLRIAFPKRASFVDFVTQVNNTDSVQGYVIDIFKAALKLIPYDVPYKFVPFGDGQINPSYDELVQSVANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVQNSKSSAWVFLKPFSAEMWCVTAVSFVIIGIVIWMLEHRINDHFRGPPKRQIITMCLFSFSTLFKANRKSFTFQSSLSIYIFISFFPFRNEVLV 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2735954 2743859 - Tan0008956.4 Tan02g0334 742960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0334 656 FunFam Glutamate receptor 145 309 - -
Tan02g0334 656 CDD PBP1_GABAb_receptor_plant 31 416 IPR044440 -
Tan02g0334 656 Pfam Ligand-gated ion channel 577 633 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0334 656 SUPERFAMILY Periplasmic binding protein-like I 24 450 IPR028082 -
Tan02g0334 656 Gene3D - 145 410 - -
Tan02g0334 656 Gene3D - 49 387 - -
Tan02g0334 656 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Tan02g0334 656 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Tan02g0334 656 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Tan02g0334 656 FunFam Glutamate receptor 453 569 - -
Tan02g0334 656 PANTHER OS06G0188250 PROTEIN 27 477 IPR015683 -
Tan02g0334 656 Pfam Receptor family ligand binding region 46 396 IPR001828 -
Tan02g0334 656 Pfam Ligated ion channel L-glutamate- and glycine-binding site 473 561 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0334 656 SUPERFAMILY Periplasmic binding protein-like II 437 586 - -
Tan02g0334 656 Gene3D - 569 650 - -
Tan02g0334 656 SMART GluR_14 459 646 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0334 656 Gene3D - 454 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0332 Tan-Chr2:2735954 Tan02g0334 Tan-Chr2:2735954 0.00E+00 dispersed
Tan02g0334 Tan-Chr2:2735954 Tan05g0870 Tan-Chr5:6927488 5.80E-232 dispersed
Tan02g0333 Tan-Chr2:2735954 Tan02g0334 Tan-Chr2:2735954 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0334 K05387 - csv:101203158 1009.59