Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g0385 | ATGGAGCGAGGATCCAGTGCTAACACTGCTGCAACTGACACTTCTTTCATGGCTGGATTTGAGAACAATAACAACAACAATAATAGTGGTCTTTCTTCTACACCACCCATGATGATGATCAATACTAATTCCCAAATGTTGGATAACAATAACAACAGCAGCAGCAACAACAGCAGCAAGATGTTTTTGCCCTTGTCTTGGTCTTCTTCTGCCAACAGCACCCGAAGGGTTTCTGCTTTTGTCCCTCATCAGAATAACAACAATGATCATATTGTTCAAAATAACTCCACCTCCACTTCCACTTCCAGAGCTAAAATTTTAGCTCATCCCCTCTTTCCTCGCCTCTTGGCTGCCTATGTTAACTGTCACAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTGGAGCAGGCGTGCGCGGTGGCTGCCGGAAGCTGTAGGACGGCGGCACGTGGGGATGATCCGGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAGCCTTTCAAAGAAGCAATGATTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAGCCCTAGCAGTTTCTTCTTCTACTTCTGATGGTTGTGAGCTGGTTAGACAAAACGAGTGTTCGAAGGAGATCGAGGTCGATATGAACGAAAACTACATCGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGACAGCTTCTGCGCAAATACAGCGGATATCTGGGCAGCCTAAAGCAAGAGTTTTTGAAGAAGAAGAAGAACGGAAAATTGCCAAAGGAAGCTCGTCAACAGCTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCTTCGGAATCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAACTGGTTCATCAATCAAAGGAAGCGCCATTGGAAACCATCAGAGGATATGCAGTTTGTGGTAATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATCTGCAATCCCTTCTCTATGGACTGTTCTTCCACTCTTTTCTGA | 1062 | 46.7 | MERGSSANTAATDTSFMAGFENNNNNNNSGLSSTPPMMMINTNSQMLDNNNNSSSNNSSKMFLPLSWSSSANSTRRVSAFVPHQNNNNDHIVQNNSTSTSTSRAKILAHPLFPRLLAAYVNCHKVGAPPEVVARLEQACAVAAGSCRTAARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMIFFSRIESQLKALAVSSSTSDGCELVRQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3239913 | 3245502 | - | Tan0014332.1 | Tan02g0385 | 743011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g0385 | 353 | SUPERFAMILY | Homeodomain-like | 257 | 332 | IPR009057 | - | |
Tan02g0385 | 353 | SMART | ELK_2 | 235 | 256 | IPR005539 | GO:0003677(InterPro) | |
Tan02g0385 | 353 | SMART | HOX_1 | 257 | 322 | IPR001356 | GO:0003677(InterPro) | |
Tan02g0385 | 353 | ProSitePatterns | 'Homeobox' domain signature. | 293 | 316 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Tan02g0385 | 353 | Pfam | ELK domain | 235 | 256 | IPR005539 | GO:0003677(InterPro) | |
Tan02g0385 | 353 | FunFam | Homeobox protein knotted-1-like 2 | 260 | 322 | - | - | |
Tan02g0385 | 353 | Pfam | Homeobox KN domain | 275 | 314 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Tan02g0385 | 353 | ProSiteProfiles | 'Homeobox' domain profile. | 255 | 318 | IPR001356 | GO:0003677(InterPro) | |
Tan02g0385 | 353 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 83 | 325 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan02g0385 | 353 | SMART | KNOX2_2 | 147 | 198 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan02g0385 | 353 | Gene3D | - | 260 | 322 | - | - | |
Tan02g0385 | 353 | SMART | KNOX1_2 | 100 | 144 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan02g0385 | 353 | CDD | homeodomain | 267 | 319 | IPR001356 | GO:0003677(InterPro) | |
Tan02g0385 | 353 | ProSiteProfiles | ELK domain profile. | 235 | 255 | IPR005539 | GO:0003677(InterPro) | |
Tan02g0385 | 353 | Pfam | KNOX1 domain | 103 | 140 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan02g0385 | 353 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Tan02g0385 | 353 | Pfam | KNOX2 domain | 152 | 196 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g0385 | Tan-Chr2:3239913 | Tan03g2274 | Tan-Chr3:77008845 | 2.00E-106 | dispersed | |
Tan02g0385 | Tan-Chr2:3239913 | Tan02g0386 | Tan-Chr2:3239913 | 3.10E-131 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26678 | PF03791 | KNOX2 | 5.30E-22 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g0385 | - | - | - | 0.0 |