Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0385 ATGGAGCGAGGATCCAGTGCTAACACTGCTGCAACTGACACTTCTTTCATGGCTGGATTTGAGAACAATAACAACAACAATAATAGTGGTCTTTCTTCTACACCACCCATGATGATGATCAATACTAATTCCCAAATGTTGGATAACAATAACAACAGCAGCAGCAACAACAGCAGCAAGATGTTTTTGCCCTTGTCTTGGTCTTCTTCTGCCAACAGCACCCGAAGGGTTTCTGCTTTTGTCCCTCATCAGAATAACAACAATGATCATATTGTTCAAAATAACTCCACCTCCACTTCCACTTCCAGAGCTAAAATTTTAGCTCATCCCCTCTTTCCTCGCCTCTTGGCTGCCTATGTTAACTGTCACAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTGGAGCAGGCGTGCGCGGTGGCTGCCGGAAGCTGTAGGACGGCGGCACGTGGGGATGATCCGGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAGCCTTTCAAAGAAGCAATGATTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAGCCCTAGCAGTTTCTTCTTCTACTTCTGATGGTTGTGAGCTGGTTAGACAAAACGAGTGTTCGAAGGAGATCGAGGTCGATATGAACGAAAACTACATCGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGACAGCTTCTGCGCAAATACAGCGGATATCTGGGCAGCCTAAAGCAAGAGTTTTTGAAGAAGAAGAAGAACGGAAAATTGCCAAAGGAAGCTCGTCAACAGCTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCTTCGGAATCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAACTGGTTCATCAATCAAAGGAAGCGCCATTGGAAACCATCAGAGGATATGCAGTTTGTGGTAATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATCTGCAATCCCTTCTCTATGGACTGTTCTTCCACTCTTTTCTGA 1062 46.7 MERGSSANTAATDTSFMAGFENNNNNNNSGLSSTPPMMMINTNSQMLDNNNNSSSNNSSKMFLPLSWSSSANSTRRVSAFVPHQNNNNDHIVQNNSTSTSTSRAKILAHPLFPRLLAAYVNCHKVGAPPEVVARLEQACAVAAGSCRTAARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMIFFSRIESQLKALAVSSSTSDGCELVRQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3239913 3245502 - Tan0014332.1 Tan02g0385 743011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0385 353 SUPERFAMILY Homeodomain-like 257 332 IPR009057 -
Tan02g0385 353 SMART ELK_2 235 256 IPR005539 GO:0003677(InterPro)
Tan02g0385 353 SMART HOX_1 257 322 IPR001356 GO:0003677(InterPro)
Tan02g0385 353 ProSitePatterns 'Homeobox' domain signature. 293 316 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan02g0385 353 Pfam ELK domain 235 256 IPR005539 GO:0003677(InterPro)
Tan02g0385 353 FunFam Homeobox protein knotted-1-like 2 260 322 - -
Tan02g0385 353 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan02g0385 353 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677(InterPro)
Tan02g0385 353 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 325 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan02g0385 353 SMART KNOX2_2 147 198 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g0385 353 Gene3D - 260 322 - -
Tan02g0385 353 SMART KNOX1_2 100 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g0385 353 CDD homeodomain 267 319 IPR001356 GO:0003677(InterPro)
Tan02g0385 353 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677(InterPro)
Tan02g0385 353 Pfam KNOX1 domain 103 140 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g0385 353 MobiDBLite consensus disorder prediction 1 35 - -
Tan02g0385 353 Pfam KNOX2 domain 152 196 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0385 Tan-Chr2:3239913 Tan03g2274 Tan-Chr3:77008845 2.00E-106 dispersed
Tan02g0385 Tan-Chr2:3239913 Tan02g0386 Tan-Chr2:3239913 3.10E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26678 PF03791 KNOX2 5.30E-22 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0385 - - - 0.0