Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0386 ATGGAGCGAGGATCCAGTGCTAACACTGCTGCAACTGACACTTCTTTCATGGCTGGATTTGAGAACAATAACAACAACAATAATAGTGGTCTTTCTTCTACACCACCCATGATGATGATCAATACTAATTCCCAAATGTTGGATAACAATAACAACAGCAGCAGCAACAACAGCAGCAAGATGTTTTTGCCCTTGTCTTGGTCTTCTTCTGCCAACAGCACCCGAAGGGTTTCTGCTTTTGTCCCTCATCAGAATAACAACAATGATCATATTGTTCAAAATAACTCCACCTCCACTTCCACTTCCAGAGCTAAAATTTTAGCTCATCCCCTCTTTCCTCGCCTCTTGGCTGCCTATGTTAACTGTCACAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTGGAGCAGGCGTGCGCGGTGGCTGCCGGAAGCTGTAGGACGGCGGCACGTGGGGATGATCCGGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAGCCTTTCAAAGAAGCAATGATTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAGCCCTAGCAGTTTCTTCTTCTACTTCTGATGGTTGTGAGCTGGTTAGACAAAACGAGTGTTCGAAGGAGATCGAGGTCGATATGAACGAAAACTACATCGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGACAGCTTCTGCGCAAATACAGCGGATATCTGGGCAGCCTAAAGCAAGAGTTTTTGAAGAAGAAGAAGAACGGAAAATTGCCAAAGGAAGCTCGTCAACAGCTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCTTCGGTACCCCCCATTGAAATTCGTCTAACTTAA 888 46.62 MERGSSANTAATDTSFMAGFENNNNNNNSGLSSTPPMMMINTNSQMLDNNNNSSSNNSSKMFLPLSWSSSANSTRRVSAFVPHQNNNNDHIVQNNSTSTSTSRAKILAHPLFPRLLAAYVNCHKVGAPPEVVARLEQACAVAAGSCRTAARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMIFFSRIESQLKALAVSSSTSDGCELVRQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSVPPIEIRLT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3239913 3245502 - Tan0014332.2 Tan02g0386 743012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0386 295 Gene3D - 231 288 - -
Tan02g0386 295 SMART KNOX1_2 100 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g0386 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 286 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan02g0386 295 SMART ELK_2 235 256 IPR005539 GO:0003677(InterPro)
Tan02g0386 295 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677(InterPro)
Tan02g0386 295 SMART KNOX2_2 147 198 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g0386 295 Pfam KNOX2 domain 152 196 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g0386 295 Pfam KNOX1 domain 103 140 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g0386 295 Pfam ELK domain 235 256 IPR005539 GO:0003677(InterPro)
Tan02g0386 295 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0386 Tan-Chr2:3239913 Tan03g2274 Tan-Chr3:77008845 1.00E-71 dispersed
Tan02g0385 Tan-Chr2:3239913 Tan02g0386 Tan-Chr2:3239913 3.10E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0386 - - - 0.0