Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0400 ATGTCTGAGGAGCAAGCAATTTCAAATGCTTTCATTTGCAGCATTCCAACACTTGGATCTAACAACAATCCTCCTGTTGTTAAAAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCAACGCGGATGTTGTGGCGTTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGCGAGATATGTGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGTTGCATAGGAGAGGACACAATCTTCCATGGAAGTTGAAGCAAAGAAGCAATAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAAAGCTGTGTTCATCACCATCCTTCAAGGGCTCTTGGAGACCTTACAGGAATTAAAAAGCACTTTTGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAATGCTCCAAGAAATATGCTGTTCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGACAGTTATGTAACTCACAGAGCATACTGTATGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCAACCATAAACAACAACTCAATCACAGCCACAGCTGACAACAACTACCATTTCCTAAAGCCCAATACAAATCCTCACCAATACAGCTTCCCTAATTCCTCCAACTTTTTCAGACCAGAACATGAAACTTTCCAAATGTTCCTTAACAACAACATTAATTCTCTCACACCCACAATAGGCCTGCCTTTTTGGATGCCAAATTCTCACCAAATCAATCTCCAAGACAACAACAATAATTTCCATCACCCATTTACACAACCGACAACGACGACAACGACGAGAACAAGAACAAGAACAACAAGCTCTCTTCTTTCAGTTCCTTCCTTGTACAGCCATGAGGAACAAGCCCATCAAGCAATGGCATCATCAGCATCAGCCAACATTATGTCAGCCACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAAGCTCCACAACAACAGACCCATCATCATCATCATTAATGGCCAGTTTTGGCTTGAATTTCAGTGCTACAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATAATGGCTCAATGAACTCAAACTCCATTCCAAGTTGTTCAAGCCTTGAAAATGGTGGAGATCAGGACTCTGCTGCCAGTAATTTGGTCCTAATGTACCCTGCTGCAAAGAGAATTAGGCACACTGTTAGTGAAGAAAGTGTCACTGGTGGAGAAGGAGAGACAAGGGATTTCTTGGGTGTGGGCATGCCCACCATTTGCCATCCATCATCAGTCAATGGATGGATCTGA 1350 43.48 MSEEQAISNAFICSIPTLGSNNNPPVVKKKRNLPGNPDPNADVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAASTINNNSITATADNNYHFLKPNTNPHQYSFPNSSNFFRPEHETFQMFLNNNINSLTPTIGLPFWMPNSHQINLQDNNNNFHHPFTQPTTTTTTRTRTRTTSSLLSVPSLYSHEEQAHQAMASSASANIMSATVLLQKAAQIGVTSSTTTDPSSSSLMASFGLNFSATTDGKALFSGLYNGSMNSNSIPSCSSLENGGDQDSAASNLVLMYPAAKRIRHTVSEESVTGGEGETRDFLGVGMPTICHPSSVNGWI 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3416286 3419483 + Tan0012060.1 Tan02g0400 743026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0400 449 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 438 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan02g0400 449 Gene3D Classic Zinc Finger 53 80 - -
Tan02g0400 449 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Tan02g0400 449 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Tan02g0400 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Tan02g0400 449 FunFam protein indeterminate-domain 12-like 36 106 - -
Tan02g0400 449 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Tan02g0400 449 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Tan02g0400 449 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Tan02g0400 449 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Tan02g0400 449 Gene3D Classic Zinc Finger 93 183 - -
Tan02g0400 449 SMART c2h2final6 135 155 IPR013087 -
Tan02g0400 449 SMART c2h2final6 57 79 IPR013087 -
Tan02g0400 449 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0400 Tan-Chr2:3416286 Tan06g1021 Tan-Chr6:9141105 9.60E-85 dispersed
Tan02g0400 Tan-Chr2:3416286 Tan05g0934 Tan-Chr5:7583683 7.80E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26680 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0400 K25870 - csv:101207997 566.229