Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g0400 | ATGTCTGAGGAGCAAGCAATTTCAAATGCTTTCATTTGCAGCATTCCAACACTTGGATCTAACAACAATCCTCCTGTTGTTAAAAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCAACGCGGATGTTGTGGCGTTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGCGAGATATGTGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGTTGCATAGGAGAGGACACAATCTTCCATGGAAGTTGAAGCAAAGAAGCAATAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAAAGCTGTGTTCATCACCATCCTTCAAGGGCTCTTGGAGACCTTACAGGAATTAAAAAGCACTTTTGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAATGCTCCAAGAAATATGCTGTTCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGACAGTTATGTAACTCACAGAGCATACTGTATGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCAACCATAAACAACAACTCAATCACAGCCACAGCTGACAACAACTACCATTTCCTAAAGCCCAATACAAATCCTCACCAATACAGCTTCCCTAATTCCTCCAACTTTTTCAGACCAGAACATGAAACTTTCCAAATGTTCCTTAACAACAACATTAATTCTCTCACACCCACAATAGGCCTGCCTTTTTGGATGCCAAATTCTCACCAAATCAATCTCCAAGACAACAACAATAATTTCCATCACCCATTTACACAACCGACAACGACGACAACGACGAGAACAAGAACAAGAACAACAAGCTCTCTTCTTTCAGTTCCTTCCTTGTACAGCCATGAGGAACAAGCCCATCAAGCAATGGCATCATCAGCATCAGCCAACATTATGTCAGCCACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAAGCTCCACAACAACAGACCCATCATCATCATCATTAATGGCCAGTTTTGGCTTGAATTTCAGTGCTACAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATAATGGCTCAATGAACTCAAACTCCATTCCAAGTTGTTCAAGCCTTGAAAATGGTGGAGATCAGGACTCTGCTGCCAGTAATTTGGTCCTAATGTACCCTGCTGCAAAGAGAATTAGGCACACTGTTAGTGAAGAAAGTGTCACTGGTGGAGAAGGAGAGACAAGGGATTTCTTGGGTGTGGGCATGCCCACCATTTGCCATCCATCATCAGTCAATGGATGGATCTGA | 1350 | 43.48 | MSEEQAISNAFICSIPTLGSNNNPPVVKKKRNLPGNPDPNADVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAASTINNNSITATADNNYHFLKPNTNPHQYSFPNSSNFFRPEHETFQMFLNNNINSLTPTIGLPFWMPNSHQINLQDNNNNFHHPFTQPTTTTTTRTRTRTTSSLLSVPSLYSHEEQAHQAMASSASANIMSATVLLQKAAQIGVTSSTTTDPSSSSLMASFGLNFSATTDGKALFSGLYNGSMNSNSIPSCSSLENGGDQDSAASNLVLMYPAAKRIRHTVSEESVTGGEGETRDFLGVGMPTICHPSSVNGWI | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3416286 | 3419483 | + | Tan0012060.1 | Tan02g0400 | 743026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g0400 | 449 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 21 | 438 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan02g0400 | 449 | Gene3D | Classic Zinc Finger | 53 | 80 | - | - | |
Tan02g0400 | 449 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 155 | IPR036236 | - | |
Tan02g0400 | 449 | Pfam | Zinc finger, C2H2 type | 57 | 79 | IPR013087 | - | |
Tan02g0400 | 449 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Tan02g0400 | 449 | FunFam | protein indeterminate-domain 12-like | 36 | 106 | - | - | |
Tan02g0400 | 449 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 134 | 158 | - | - | |
Tan02g0400 | 449 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 96 | 130 | - | - | |
Tan02g0400 | 449 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Tan02g0400 | 449 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 113 | 192 | - | - | |
Tan02g0400 | 449 | Gene3D | Classic Zinc Finger | 93 | 183 | - | - | |
Tan02g0400 | 449 | SMART | c2h2final6 | 135 | 155 | IPR013087 | - | |
Tan02g0400 | 449 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Tan02g0400 | 449 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 161 | 200 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g0400 | Tan-Chr2:3416286 | Tan06g1021 | Tan-Chr6:9141105 | 9.60E-85 | dispersed | |
Tan02g0400 | Tan-Chr2:3416286 | Tan05g0934 | Tan-Chr5:7583683 | 7.80E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26680 | None | None | None | None | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g0400 | K25870 | - | csv:101207997 | 566.229 |