Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0401 ATGCATTCTGTTCTTCTTCTTCTTCCTCTTCTTCTTCCATTCGTCTTTTCGCTCAATCAAGAAGGACTGTATCTTCAGCGAGTCAAACTCGGTCTCTCCGATCCCACTCAGTCCCTTTCTTCATGGAATCCTCGCGACGATACTCCCTGCAACTGGTCCGGCGTCACATGCGATTCCGTTTCTCGTTCTGTCGTCGCCGTCGACCTCTCCGATTTCCAGCTCGCCGGACCCTTTCCGACCTTCTTTTGTCGCCTTCCTTCTCTTTCATCTCTCTTTCTTTCCAATAACGCCATTAACGCTTCTCTTCCCGACGATGTTGCCTCCTGTTCTGCCCTCCAGCGGCTTAACTTGTCGCAGAATCTTCTCGCTGGCTCCATTCCCGATGCGCTTTTCAAGATCGCGAATCTTCGGGTACTGGATCTCTCTGGAAATAACTTCTCCGGGGAGATTCCGGCTAGTTTCGGTGGGTTTCGGCGGTTGGAGACGCTGAATTTGGTTGATAATCTTTTGAATGGTACTATTCCGGGGAGTTTGGGTAACATTTCGAGTTTGAAAGAGCTTCAACTTGCGTACAATCCGTTTTCTCGGAGTGAGATACCGAGTGCATTTGGGAACTTGACGAAGCTGGAGGTTCTCTGGGTTGCGAACTGTAATCTTGCCGGTCAGATTCCGGAAACCATTGGCGGGATGACTCGGCTTAAGAATCTGGACTTGTCGAACAATAGACTCAGTGGGTCGATTCCGGTGTCAATCACTCAAATGAAAAGTCTAGTTCAAATTGAACTGTTTAACAACTCGCTCTCCGGCGAGTTGCCTTTGGGACTGTCTAATTTAACTGCATTGCGACGAATTGATGTGTCGATGAATCAATTGACTGGAACAATTCCGGATGAGCTTTGTGCATTACAGCTTGAGTCGCTAAATTTGTTCGAGAATCGTTTGGAAGGGCCTTTGCCGGAGAGTATCGTTAGGTCCCCATACTTGAATGAGCTAAAATTGTTTAACAACAAGCTTAGTGGACAGTTACCCAGTAAACTCGGGCAAAACTCGCCATTAGTGCATCTCGATGTTTCATACAACGGATTTTCTGGCGGAATCCCGGAAAACTTGTGTGCAAAAGGGGCATTGGAAGAGCTTATATTGATTTACAATTCATTTTCCGGGGAAATTCCGGTGAGTCTTGGAAAATGCACGAGCTTAAGCCGGGTTCGGATGAGGAACAACAAACTCTCGGGTTCGGTTCCTGATGATTTTTGGGGTCTGCCAAATGTGTATTTGCTTGAACTCGTCGAAAATTCGCTCTCTGGGTCTATTTCTTCGATGATATCTAGTGCTAGGAATCTCTCTATTCTAATGATCTCAGAAAATCAATTTTCAGGGCCAATTCCGGACGAGATTGGGTCGTTGAGCAATCTGACTGAACTTTCAGGTAGTGACAACATGTTTTCCGGTCAAATCCCGGAAACTTTGGTGAAGTTAAGCTTGTTGGGTAAACTCGATCTATGCGAGAACAAACTTTCTGGTGAATTACCAAAGGGAATTGGAGCTCTGAAGAGGCTAAACGAGCTAAATTTGGCAGACAACAGGCTATCTGGCAATATTCCGAGTGAAATTGGAAGCCTACCTGTGCTTAATTATCTCGATCTCTCTAGTAACCATCTCAGTGGAAGCATACCTCTAGAATTGCAGAATTTGAAACTGAATTCGCTAAATCTGTCGAACAATCTGTTATCAGGAGTACTCCCTCCTCTTTATGCCGAGGAGATTTACAGAGACAGCTTTCTGGGTAATCCTGGTTTGTGCAAGAACGCCCCAAGCCTTTGTCCTCGCGTTGGAAAAGGCAAAAACCAAGGCTACTGGCTTCTCAGAGCCATTTTTCTACTTGCTATCGTTGTTTTTGTTGTTGGGGTCATTTGGTTCTTATTTAAGTACAAGGAATTCAAGAAGAACAAGAACGGAATTGCCATTTCTAAGTGGAGATCATTCCACAAACTTGGTTTCAGTGAGTATGAAATCGCAGACTGTCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCATCCGGCAAAGTGTACAAAGTTGTGCTGAAGAACGGCGAGGCTGTGGCCGTGAAGAAGCTATGGCAAGGAACAAAAAAAGAGGACACCAGTTTGGATTCCGAGAAAGATGGATTTGAGGCTGAAGTTGAGACTTTAGGGAAGATTCGCCATAAGAATATTGTACGGTTATGGTGCTGCTGCAACGCCGGCAATTGCAAGCTGCTTGTTTATGAGTACATGCCTAATGGGAGCTTGGGAGATTTGCTGCACGGCAGCAGAAAACGCTTTTTGGATTGGCCTACAAGGTATAAAGTAGCTTTGGATGCAGCTGAAGGGCTTTCTTACTTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGATATTAAATCCAACAATATACTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCAGACTTTGGATTAGCTAAGTTTTTGAATGCTGGCAAGGGCTCAGAATCTATGTCTGTCATTGCTGGTTCTTGCGGTTACATTGCACCAGAATATGCTTATACATTAAGAGTAAATGAAAAGAGTGACATCTACAGCTTTGGAGTGGTAATTTTAGAGCTGGTGACAGGGAGACCTCCAAACGATCCAGAATTTGGAGACAAAGACTTGGCAAAGTGGGTCTACGCCACCGTCGACTGCAGAGGACTCGACCAAGTGATCGATTCGAAACTCGGTTCCGAATACAAGGAAGAAATCTACAGAGTCCTCAACGTGGGATTGCTTTGCACAAGCTCACTCCCCATCAACCGCCCCTCAATGAGAAGAGTCGTCAAACTGCTGCAAGAGGCTGCCACAGAAACCAGACCCGCCACGGTTAGTAAGGAAGCCAAACTTTCTCCACATTTTTCCTAG 2922 45.55 MHSVLLLLPLLLPFVFSLNQEGLYLQRVKLGLSDPTQSLSSWNPRDDTPCNWSGVTCDSVSRSVVAVDLSDFQLAGPFPTFFCRLPSLSSLFLSNNAINASLPDDVASCSALQRLNLSQNLLAGSIPDALFKIANLRVLDLSGNNFSGEIPASFGGFRRLETLNLVDNLLNGTIPGSLGNISSLKELQLAYNPFSRSEIPSAFGNLTKLEVLWVANCNLAGQIPETIGGMTRLKNLDLSNNRLSGSIPVSITQMKSLVQIELFNNSLSGELPLGLSNLTALRRIDVSMNQLTGTIPDELCALQLESLNLFENRLEGPLPESIVRSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPENLCAKGALEELILIYNSFSGEIPVSLGKCTSLSRVRMRNNKLSGSVPDDFWGLPNVYLLELVENSLSGSISSMISSARNLSILMISENQFSGPIPDEIGSLSNLTELSGSDNMFSGQIPETLVKLSLLGKLDLCENKLSGELPKGIGALKRLNELNLADNRLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNSLNLSNNLLSGVLPPLYAEEIYRDSFLGNPGLCKNAPSLCPRVGKGKNQGYWLLRAIFLLAIVVFVVGVIWFLFKYKEFKKNKNGIAISKWRSFHKLGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEAVAVKKLWQGTKKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNAGNCKLLVYEYMPNGSLGDLLHGSRKRFLDWPTRYKVALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDKDLAKWVYATVDCRGLDQVIDSKLGSEYKEEIYRVLNVGLLCTSSLPINRPSMRRVVKLLQEAATETRPATVSKEAKLSPHFS 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3423966 3427769 - Tan0006121.1 Tan02g0401 743027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0401 973 Pfam Protein kinase domain 678 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g0401 973 SUPERFAMILY L domain-like 302 585 - -
Tan02g0401 973 Gene3D Phosphorylase Kinase; domain 1 658 758 - -
Tan02g0401 973 Pfam Leucine rich repeat 135 193 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 Pfam Leucine rich repeat 208 267 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 SMART LRR_typ_2 493 517 IPR003591 -
Tan02g0401 973 SMART LRR_typ_2 278 302 IPR003591 -
Tan02g0401 973 SMART LRR_typ_2 230 254 IPR003591 -
Tan02g0401 973 SMART LRR_typ_2 85 109 IPR003591 -
Tan02g0401 973 SMART LRR_typ_2 133 156 IPR003591 -
Tan02g0401 973 SMART LRR_typ_2 541 564 IPR003591 -
Tan02g0401 973 SMART LRR_typ_2 181 205 IPR003591 -
Tan02g0401 973 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 18 181 - -
Tan02g0401 973 FunFam Leucine-rich receptor-like protein kinase family protein 199 297 - -
Tan02g0401 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan02g0401 973 SUPERFAMILY RNI-like 67 364 - -
Tan02g0401 973 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524(InterPro)
Tan02g0401 973 Pfam Leucine rich repeat N-terminal domain 18 58 IPR013210 -
Tan02g0401 973 ProSiteProfiles Leucine-rich repeat profile. 232 254 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 759 967 - -
Tan02g0401 973 Gene3D Ribonuclease Inhibitor 173 274 IPR032675 -
Tan02g0401 973 ProSiteProfiles Protein kinase domain profile. 676 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g0401 973 FunFam Receptor-like protein kinase HSL1 303 610 - -
Tan02g0401 973 Gene3D Transferase(Phosphotransferase) domain 1 759 969 - -
Tan02g0401 973 SMART serkin_6 676 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g0401 973 Pfam Leucine Rich Repeat 566 583 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 Pfam Leucine Rich Repeat 112 131 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 Pfam Leucine Rich Repeat 544 565 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 Pfam Leucine Rich Repeat 281 302 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 Pfam Leucine Rich Repeat 447 469 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 Pfam Leucine Rich Repeat 520 541 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
Tan02g0401 973 SUPERFAMILY Protein kinase-like (PK-like) 669 950 IPR011009 -
Tan02g0401 973 PRINTS Leucine-rich repeat signature 233 246 - -
Tan02g0401 973 PRINTS Leucine-rich repeat signature 541 554 - -
Tan02g0401 973 Gene3D Ribonuclease Inhibitor 275 611 IPR032675 -
Tan02g0401 973 FunFam Receptor-like protein kinase HSL1 660 758 - -
Tan02g0401 973 Gene3D Ribonuclease Inhibitor 18 172 IPR032675 -
Tan02g0401 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 953 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0401 Tan-Chr2:3423966 Tan03g2516 Tan-Chr3:78512855 6.20E-137 dispersed
Tan02g0401 Tan-Chr2:3423966 Tan05g2466 Tan-Chr5:75814122 7.20E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67188 PF00069 Pkinase 2.40E-44 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0401 - - - 0.0