Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0409 ATGCCAAAGAAGGGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAGTATGCCCAAGTACTCCGGAGGCTCGGTAATGGTCATTGTGTAGCAATGTGTATCGACGGGACTAAACGTCTTTGCCATATTGGGGAAAAAATGCACAACAAAGTTTGGATTGCAGCTGGGGATATCATACTTGTTGGTCTTCGTGACAATCAAGACGACAAGGCTGATGTGATTCTTAAATACATGTCTGATGAAGTTAGGCTTTTGAAAGGATACAGTGAGCTACCTGAGAATACACGTCTCAAAGAGGGTATCGTTGGGGGTATGGATGAGGACAAAGATTTTGATATCGAGTTTATGGACGAAGATTTTGATTAG 363 42.98 MPKKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDFDIEFMDEDFD 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3531085 3532515 + Tan0012248.1 Tan02g0409 743035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0409 120 CDD S1_IF1A 14 90 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g0409 120 PANTHER EIF-1A 3 117 IPR001253 GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Tan02g0409 120 SMART eIF1neu4 9 91 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g0409 120 SUPERFAMILY Nucleic acid-binding proteins 5 118 IPR012340 -
Tan02g0409 120 Hamap Translation initiation factor 1A [eif1a]. 2 91 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g0409 120 Pfam Translation initiation factor 1A / IF-1 13 74 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Tan02g0409 120 Gene3D - 2 120 IPR012340 -
Tan02g0409 120 ProSiteProfiles S1 domain IF1 type profile. 3 77 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0409 Tan-Chr2:3531085 Tan10g1284 Tan-Chr10:14779839 1.40E-46 dispersed
Tan02g0409 Tan-Chr2:3531085 Tan05g0948 Tan-Chr5:7727661 3.10E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0409 K03236 - csv:101207840 178.718