Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0456 ATGGTTTCTTCAGGGGACCAAATAGAGAATAAAGTTGATCCTGATAGATTGAAGCATGAACAAAGTTCAGATAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGTGGAACTAATGCATCAAACTCAGATCACAAACGCACAGCGGCTGCCGGGAAGACACTTGAAGAAGCTGTCAAGCAGCCTGACTTCACAATCGAACAAGTGGATCGAGGAGGCATCTCTACTATAGTGTCTGAGAAAGTGACCCACAACCCAATTTCTGCGGACCAGGACTCACATCCTGATTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCGGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTAGTAAAGGGAAACGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAGAATTACAGATACTGTTTACTTTGGCCAGCATGATCACCCTAAACCTCAATCTCACATCCCAGTTGCTGTTGGAGTTGTTGCCATGGTTGAAGAAAAAATAGATGAACATGCTTCTAGAAGTTCTCAAGATAAGACCTCCATTGCGCTTGGCCAGACACCTCATAAAACTGAGCCGGCTGATACGCTTCAACTGCCATCAGTCATGACCAGCGATAATGTTAAAGATGAAGCTTTGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACGGGACTTGAAACGAGAGAAGAAAAGATTTAATATTGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCACGTGTCGTTGTTCAAACTCCTAGTGAGGTTGACATTGTGAACGATGGTTACCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCACGATCCAAAGTTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACTCAGTTGGGTCCACAGCAGCCCATAGTGATGAGATAAAAACAAAATCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCAAGCTAGTAAGGATCCTCTAAGCAATTCAAGTTCTGAAGGCAAATTAATCGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATCGTCCTCGATATGGTGGTAAATTCCAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTGAAAGTAGCAATTGAAAGCTAA 1308 44.42 MVSSGDQIENKVDPDRLKHEQSSDSQSQASQEDPGGTNASNSDHKRTAAAGKTLEEAVKQPDFTIEQVDRGGISTIVSEKVTHNPISADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGRITDTVYFGQHDHPKPQSHIPVAVGVVAMVEEKIDEHASRSSQDKTSIALGQTPHKTEPADTLQLPSVMTSDNVKDEALKRSRINDEVDSDDTRDLKREKKRFNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKLVLTTYEGQHDHDMPPARTVTLNSVGSTAAHSDEIKTKSVGSSIGHDTVVQASKDPLSNSSSEGKLIEKNGKSNATEASDGIVLDMVVNSSPGVASGQNKQLKVAIES 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4293249 4297481 + Tan0021375.1 Tan02g0456 743082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0456 435 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 Gene3D WRKY domain 95 169 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 FunFam WRKY transcription factor 57 268 342 - -
Tan02g0456 435 FunFam WRKY transcription factor 98 169 - -
Tan02g0456 435 MobiDBLite consensus disorder prediction 188 219 - -
Tan02g0456 435 ProSiteProfiles WRKY domain profile. 277 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 MobiDBLite consensus disorder prediction 23 47 - -
Tan02g0456 435 MobiDBLite consensus disorder prediction 351 406 - -
Tan02g0456 435 SUPERFAMILY WRKY DNA-binding domain 274 342 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 MobiDBLite consensus disorder prediction 195 219 - -
Tan02g0456 435 MobiDBLite consensus disorder prediction 351 404 - -
Tan02g0456 435 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 154 356 IPR044810 GO:0003700(InterPro)
Tan02g0456 435 SMART WRKY_cls 109 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 SMART WRKY_cls 282 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 MobiDBLite consensus disorder prediction 1 55 - -
Tan02g0456 435 Gene3D WRKY domain 269 335 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g0456 435 SUPERFAMILY WRKY DNA-binding domain 104 168 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0456 Tan-Chr2:4293249 Tan04g1036 Tan-Chr4:9248866 2.00E-55 dispersed
Tan02g0456 Tan-Chr2:4293249 Tan08g2412 Tan-Chr8:75363300 6.10E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26683 PF03106 WRKY 2.50E-26 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0456 K18834 - csv:101212482 677.167