Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0465 ATGGCCACTTCTGCTATCCAACAATCCGCCTTCTCCGGCCAGGCTGCCTTGAAGCAATCCAATGAGCTTGTCCGAAAGGTCGGTGCTGTCGGTGGCGGCCGCTACACCATGCGGAGGACCGTCAAGAGTGCTCCACAGAGCATATGGTATGGCCCAGACCGCCCAAAATACTTGGGACCATTCTCTGAACAAACACCATCTTACCTGACTGGAGAGTTCCCTGGTGACTACGGATGGGATACAGCCGGTCTGTCAGCAGATCCCGAGACTTTCGCGAAGAACCGTGAGCTTGAGGTAATCCACTCCCGATGGGCCATGCTTGGTGCATTAGGTTGTGTCTTCCCTGAAATCCTTGCAAAGAATGGTGTCAAGTTCGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTCGATTACCTTGGCAACCCAAACCTCGTCCATGCCCAGAGTATCCTTGCAATCTGGGCTTGCCAGGTTGTGCTGATGGGCTTTGTCGAAGGTTACCGGGTTGGTGGCGGTCCCCTTGGTGAAGGACTCGACCCAATTTACCCAGGAGGCGCCTTCGACCCACTCGGATTGGCAGATGACCCAGATGCATTTGCTGAGTTGAAGGTGAAGGAACTAAAGAATGGAAGGCTGGCAATGTTCTCCATGTTCGGATTCTTTGTCCAGGCTATCGTCACTGGAAAGGGTCCTATTGAAAATCTCTTTGACCATGTTGCAGATCCAGTTGCCAACAATGCATGGGCTTATGCCACCAACTTTGTCCCCGGAAAATGA 798 52.51 MATSAIQQSAFSGQAALKQSNELVRKVGAVGGGRYTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4347962 4349163 - Tan0001086.1 Tan02g0465 743091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0465 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Tan02g0465 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Tan02g0465 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
Tan02g0465 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Tan02g0465 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1601 Tan-Chr1:16260739 Tan02g0465 Tan-Chr2:4347962 2.30E-102 dispersed
Tan01g5181 Tan-Chr1:116817948 Tan02g0465 Tan-Chr2:4347962 1.10E-53 dispersed
Tan02g0465 Tan-Chr2:4347962 Tan03g2667 Tan-Chr3:79732554 3.80E-121 dispersed
Tan02g0465 Tan-Chr2:4347962 Tan04g2344 Tan-Chr4:81912241 6.80E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0465 K08913 - csv:101212963 538.495