Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0487 ATGTCTTCAAGTTCAACTAATAAGGCTGCGTGTTCTAAGACCAGCTGCGATCGATCAAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTAGACTTTGAAGGTTCAGAAAGGTTCTTTAATTACTCGGCATCTGTTGATTTGAATGCATCAAGTTCCACTAGCAATGTTCATGCCTCTACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTTTAGTTCAACCGTTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCAGTCCTTGCCTATAGTGAAAATGCTCCTGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGGTCAGATGTACGGACCCTTTTTCGTTCCCCAGGAGCTGCCGCATTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGTAGAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGGTTAATTATAGATTTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACGGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTACTGGTTAAGGAGGTTAGTGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGTCGACCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTCAGGATGATATGTGATTGTTTTGCACCTCCAGTTAAAGTGCTTGAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCACTAAGGGCTCCTCATGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTACTGCATCTCTTGTGATGTCTATTACAATTAATGAGAATGATAGCGAATTAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCATACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGCGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTAACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTACAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCAGAAATTAGAGATATAGTTGAATGGCTTCTCAAAGACCATAGTGGGAGCACAGGTTTAAGTACCGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGTCCTTGGTGACGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCCAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGGCGACCAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCACTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGAAGTTGAAGAAGAATGCAAAGTCATTACAAAAGTCCCATCAGTTGATGAGAAGACACAACAGTTGGATGAATTGCGTGTCATAACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAACTCCAAAGCTACTGAGCTTACAGGATTGGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGGTTTCCTTGGCCATTAAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACATTTGGAATTCCAGAACACAAAGGTCCTGTGATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTAAACAATAATGTTGTAGGAGTTTGCTTTATAGGGCAGGATGTTACTAAGCAAAAACTGTTAATGAACCAATACACTCAAATCCAAGGTGATTACACGGGGATTATGCGAAACCCATCTGCGCTTATTCCTCCAATTTTTATGACCGATGATGATGGCCGGTGTTTGGAATGGAATGAGGCAATGGAGAAATTATCTGGTTTTAGAAGGGAAGAGATGACAAATAGGATGCTTTTCGGGGAGGTTTTCACACTAGAAAATTTTGGCTGCCGTGTGAAAGATCAGACATTGACCAGGCTTAGGATACTACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGGAATTATGTTGAAACTTTGCTAACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATACGCTTTGGAGATGCAGCGGATATCAGAACAAGCAACAGCTAATAATCTCCATAAATTGGCATATCTACGTCAAGAAATTCGAAAACCACTTGGTGGGATTACATTTATGCAGAATCTAATGGGTTCATCTGACTTGAACAAAGAGCAAAAGCGGCTACTTAAATTGAACACTTTGAGTCGGGAACAATTACACAAGATTATAGATGATACTGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAATTCAACCTTGGAGATATTCTTGACGTTGTAACGAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATCATTTGTGAATCACCTTCTGAAGTGTCATCTCTGCACTTGTATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTAACTAACACACTTCTCTTCACTTGCAAAGGATCATCCGTCGTCTTCAAAACAGCTCCAAGGAAGGAGCGAATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCAGGAATTCCTGTGCACTTAATCCGAGAGATGTTTGATGACAACCATAATAGCTCAAAGGAAGGTCTTGGCCTATACATGAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCAAAACCTCGTCATTCATCATCCTCATAGAGTTCCCATTGGTAGAACATAGTGCTTAA 3357 41.67 MSSSSTNKAACSKTSCDRSKHGAHVVAQTPIDAKLHVDFEGSERFFNYSASVDLNASSSTSNVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGSDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCFAPPVKVLEDRRLTQPLSLCGSALRAPHGCHARYMMNMGSTASLVMSITINENDSELENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYYRKKFWLLGVTPTEAEIRDIVEWLLKDHSGSTGLSTDSLIEAGFYGASVLGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEVEEECKVITKVPSVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMVSLAIKGIEEKNIEIKLKTFGIPEHKGPVILEVNSCCSRDLNNNVVGVCFIGQDVTKQKLLMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNEAMEKLSGFRREEMTNRMLFGEVFTLENFGCRVKDQTLTRLRILLHRVISGQDTEKFLFRFCDREGNYVETLLTASKRTDAEGNITGVFFFLHVASPELQYALEMQRISEQATANNLHKLAYLRQEIRKPLGGITFMQNLMGSSDLNKEQKRLLKLNTLSREQLHKIIDDTDIQSIEECYMETNCSEFNLGDILDVVTNQIMILSQEREVKIICESPSEVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKGSSVVFKTAPRKERIGKGIHIVHLELRITHPAPGIPVHLIREMFDDNHNSSKEGLGLYMSQKLVKIMNGTVQYLREAKTSSFIILIEFPLVEHSA 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4451723 4458298 - Tan0021578.1 Tan02g0487 743113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0487 1118 CDD PAS 624 730 IPR000014 -
Tan02g0487 1118 NCBIfam PAS domain S-box protein 620 735 IPR000014 -
Tan02g0487 1118 NCBIfam PAS domain S-box protein 760 866 IPR000014 -
Tan02g0487 1118 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 PANTHER OS08G0260000 PROTEIN 1 992 - -
Tan02g0487 1118 FunFam Phytochrome 954 1113 - -
Tan02g0487 1118 CDD PAS 757 867 IPR000014 -
Tan02g0487 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Tan02g0487 1118 Pfam PAS fold 616 730 IPR013767 GO:0006355(InterPro)
Tan02g0487 1118 Pfam PAS fold 756 867 IPR013767 GO:0006355(InterPro)
Tan02g0487 1118 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Tan02g0487 1118 SUPERFAMILY GAF domain-like 406 586 - -
Tan02g0487 1118 Gene3D PAS domain 600 744 - -
Tan02g0487 1118 Gene3D - 403 576 IPR043150 -
Tan02g0487 1118 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Tan02g0487 1118 SMART HKATPase_4 1001 1115 IPR003594 -
Tan02g0487 1118 SUPERFAMILY GAF domain-like 199 395 - -
Tan02g0487 1118 FunFam Phytochrome 609 740 - -
Tan02g0487 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1112 IPR003594 -
Tan02g0487 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Tan02g0487 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 726 IPR035965 -
Tan02g0487 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1107 IPR036890 -
Tan02g0487 1118 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Tan02g0487 1118 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Tan02g0487 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Tan02g0487 1118 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0487 1118 Gene3D PAS domain 759 870 - -
Tan02g0487 1118 SMART pas_2 745 814 IPR000014 -
Tan02g0487 1118 SMART pas_2 615 681 IPR000014 -
Tan02g0487 1118 FunFam Phytochrome 403 534 - -
Tan02g0487 1118 Gene3D - 934 1107 IPR036890 -
Tan02g0487 1118 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Tan02g0487 1118 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Tan02g0487 1118 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Tan02g0487 1118 Gene3D PAS domain 74 322 - -
Tan02g0487 1118 Gene3D - 200 559 IPR029016 -
Tan02g0487 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0487 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2783 Tan-Chr1:52546997 Tan02g0487 Tan-Chr2:4451723 0.00E+00 dispersed
Tan01g2789 Tan-Chr1:53130787 Tan02g0487 Tan-Chr2:4451723 0.00E+00 dispersed
Tan02g0487 Tan-Chr2:4451723 Tan02g0490 Tan-Chr2:4451723 0.00E+00 dispersed
Tan02g0487 Tan-Chr2:4451723 Tan02g0488 Tan-Chr2:4451723 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g2314 . 28 1219 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1464.5
Tan01g2315 . 28 1152 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1345.1
Tan11g1724 . 23 986 Histidine Kinase Gene Family AT2G01830 73.0 0.0e+00 1339.3
Tan04g1702 . 20 1003 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1338.9
Tan06g1521 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan06g1522 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan02g0457 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan02g0458 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan05g0968 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0969 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0970 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan01g3520 . 1 998 Histidine Kinase Gene Family AT5G10720 58.3 6.8e-295 1010.7
Tan01g3521 . 1 961 Histidine Kinase Gene Family AT5G10720 57.5 1.0e-274 943.7
Tan01g2789 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.1 0.0e+00 1852.0
Tan01g2783 . 1 1134 Histidine Kinase Gene Family AT1G09570 72.0 0.0e+00 1645.9
Tan02g0487 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan02g0490 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan10g1077 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.3
Tan02g0489 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0488 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0491 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0492 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0493 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan10g1077 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Tan05g2567 . 31 1042 Histidine Kinase Gene Family AT2G18790 61.5 0.0e+00 1263.8
Tan01g2789 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1090.9
Tan02g0487 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan02g0490 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan01g2783 . 20 1071 Histidine Kinase Gene Family AT2G18790 51.5 1.9e-310 1062.8
Tan02g0489 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0488 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0487 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0490 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0489 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0488 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0491 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0492 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0493 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan10g1077 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.6 0.0e+00 1147.5
Tan01g2789 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Tan10g1077 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1708.0
Tan05g2567 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.1 0.0e+00 1303.9
Tan01g2789 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1138.3
Tan02g0487 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0490 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0489 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0488 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan05g2567 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1385.5
Tan10g1077 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1275.0
Tan02g0491 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0492 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0493 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40