Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0488 ATGTCTTCAAGTTCAACTAATAAGGCTGCGTGTTCTAAGACCAGCTGCGATCGATCAAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTAGACTTTGAAGGTTCAGAAAGGTTCTTTAATTACTCGGCATCTGTTGATTTGAATGCATCAAGTTCCACTAGCAATGTTCATGCCTCTACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTTTAGTTCAACCGTTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCAGTCCTTGCCTATAGTGAAAATGCTCCTGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGGTCAGATGTACGGACCCTTTTTCGTTCCCCAGGAGCTGCCGCATTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGTAGAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGGTTAATTATAGATTTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACGGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTACTGGTTAAGGAGGTTAGTGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGTCGACCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTCAGGATGATATGTGATTGTTTTGCACCTCCAGTTAAAGTGCTTGAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCACTAAGGGCTCCTCATGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTACTGCATCTCTTGTGATGTCTATTACAATTAATGAGAATGATAGCGAATTAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCATACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGCGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTAACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTACAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCAGAAATTAGAGATATAGTTGAATGGCTTCTCAAAGACCATAGTGGGAGCACAGGTTTAAGTACCGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGTCCTTGGTGACGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCCAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGGCGACCAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCACTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGAAGTTGAAGAAGAATGCAAAGTCATTACAAAAGTCCCATCAGTTGATGAGAAGACACAACAGTTGGATGAATTGCGTGTCATAACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAACTCCAAAGCTACTGAGCTTACAGGATTGGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGGTTTCCTTGGCCATTAAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACATTTGGAATTCCAGAACACAAAGGTCCTGTGATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTAAACAATAATGTTGTAGGAGTTTGCTTTATAGGGCAGGATGTTACTAAGCAAAAACTGTTAATGAACCAATACACTCAAATCCAAGGTGATTACACGGGGATTATGCGAAACCCATCTGCGCTTATTCCTCCAATTTTTATGACCGATGATGATGGCCGGTGTTTGGAATGGAATGAGGCAATGGAGAAATTATCTGGTTTTAGAAGGGAAGAGATGACAAATAGGATGCTTTTCGGGGAGGTTTTCACACTAGAAAATTTTGGCTGCCGTGTGAAAGATCAGACATTGACCAGGCTTAGGATACTACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGGAATTATGTTGAAACTTTGCTAACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATACGCTTTGGAGATGCAGCGGATATCAGAACAAGCAACAGCTAATAATCTCCATAAATTGGCATATCTACGTCAAGAAATTCGAAAACCACTTGGTGGGATTACATTTATGCAGAATCTAATGGGTTCATCTGACTTGAACAAAGAGCAAAAGCGGCTACTTAAATTGAACACTTTGAGTCGGGAACAATTACACAAGATTATAGATGATACTGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAATTCAACCTTGGAGATATTCTTGACGTTGTAACGAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGATCATCCGTCGTCTTCAAAACAGCTCCAAGGAAGGAGCGAATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGA 3027 41.43 MSSSSTNKAACSKTSCDRSKHGAHVVAQTPIDAKLHVDFEGSERFFNYSASVDLNASSSTSNVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGSDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCFAPPVKVLEDRRLTQPLSLCGSALRAPHGCHARYMMNMGSTASLVMSITINENDSELENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYYRKKFWLLGVTPTEAEIRDIVEWLLKDHSGSTGLSTDSLIEAGFYGASVLGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEVEEECKVITKVPSVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMVSLAIKGIEEKNIEIKLKTFGIPEHKGPVILEVNSCCSRDLNNNVVGVCFIGQDVTKQKLLMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNEAMEKLSGFRREEMTNRMLFGEVFTLENFGCRVKDQTLTRLRILLHRVISGQDTEKFLFRFCDREGNYVETLLTASKRTDAEGNITGVFFFLHVASPELQYALEMQRISEQATANNLHKLAYLRQEIRKPLGGITFMQNLMGSSDLNKEQKRLLKLNTLSREQLHKIIDDTDIQSIEECYMETNCSEFNLGDILDVVTNQIMILSQEREDHPSSSKQLQGRSELGRESTLFILN 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4451723 4458701 - Tan0021578.2 Tan02g0488 743114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0488 1008 CDD PAS 624 730 IPR000014 -
Tan02g0488 1008 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Tan02g0488 1008 Gene3D - 403 576 IPR043150 -
Tan02g0488 1008 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Tan02g0488 1008 Gene3D PAS domain 600 744 - -
Tan02g0488 1008 Gene3D PAS domain 74 322 - -
Tan02g0488 1008 CDD PAS 757 867 IPR000014 -
Tan02g0488 1008 CDD HisKA 894 944 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan02g0488 1008 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Tan02g0488 1008 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 NCBIfam PAS domain S-box protein 760 866 IPR000014 -
Tan02g0488 1008 NCBIfam PAS domain S-box protein 620 735 IPR000014 -
Tan02g0488 1008 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan02g0488 1008 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 726 IPR035965 -
Tan02g0488 1008 SUPERFAMILY GAF domain-like 406 586 - -
Tan02g0488 1008 SUPERFAMILY GAF domain-like 199 395 - -
Tan02g0488 1008 FunFam Phytochrome 403 534 - -
Tan02g0488 1008 Pfam PAS fold 756 867 IPR013767 GO:0006355(InterPro)
Tan02g0488 1008 Pfam PAS fold 616 730 IPR013767 GO:0006355(InterPro)
Tan02g0488 1008 Gene3D PAS domain 759 870 - -
Tan02g0488 1008 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Tan02g0488 1008 Gene3D - 200 559 IPR029016 -
Tan02g0488 1008 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Tan02g0488 1008 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Tan02g0488 1008 SMART pas_2 745 814 IPR000014 -
Tan02g0488 1008 SMART pas_2 615 681 IPR000014 -
Tan02g0488 1008 PANTHER OS08G0260000 PROTEIN 1 746 - -
Tan02g0488 1008 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Tan02g0488 1008 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Tan02g0488 1008 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Tan02g0488 1008 FunFam Phytochrome 609 740 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0488 Tan-Chr2:4451723 Tan02g0490 Tan-Chr2:4451723 0.00E+00 dispersed
Tan02g0487 Tan-Chr2:4451723 Tan02g0488 Tan-Chr2:4451723 0.00E+00 tandem
Tan02g0488 Tan-Chr2:4451723 Tan02g0489 Tan-Chr2:4451723 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0488 - - - 0.0