Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0513 ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGTGCTTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATCGTTCGTTTGATCCTTCACATTGTAGGAATCCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGATAATTCCTCAGAGTTAGGAGATTACAATTTTGGTTCCTCTTGGAGTTACATAGAGACATTTCGGAATCGATATCCAATGATTAGGTTTGATAAAGTACAGGGCTCTGAACGTCATGAACACGACTGCTCGGTCTGCTTAACTCCGTTCGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCACCTTTTTCACAGAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATGGTGCTTGTGGTGA 465 44.52 MGLSSLPAPSEGVLNVLLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLDNSSELGDYNFGSSWSYIETFRNRYPMIRFDKVQGSERHEHDCSVCLTPFEPESEINHLSCGHLFHRECLEKWLDYWNITCPLCRTPLMSEEEKWCLW 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4608175 4609901 - Tan0014122.2 Tan02g0513 743139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0513 154 PANTHER - 1 151 IPR044249 -
Tan02g0513 154 Pfam Ring finger domain 98 141 IPR001841 -
Tan02g0513 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Tan02g0513 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 146 IPR013083 -
Tan02g0513 154 SUPERFAMILY RING/U-box 90 146 - -
Tan02g0513 154 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0513 Tan-Chr2:4608175 Tan05g0994 Tan-Chr5:8309836 6.10E-55 dispersed
Tan02g0512 Tan-Chr2:4608175 Tan02g0513 Tan-Chr2:4608175 3.80E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0513 K16285 - csv:101215605 254.218