Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0515 ATGGGTTACATATGTGATTTCTGTGGACATCAACGGTCGATTGTCTACTGCCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCTTGTCGAGGCGCCATTCAAGAACATTGTTATGTGATCGGTGCCATTTACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATGAATTGTTACACAGGCTGCCCAACAGCTGCAGAGCTCTCATCTCTCTGGCCATTTGTTCTAGATCTCCCTTCTGTAAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATACCTGGGGCCCTGATGATAAAGCAGGTCAAAATGTCTGTGGTGTAGATGAAACCAATGAATTCTCAAATGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTATAGATGCAACTTCCCCCCAGTTGCACTGTCCTGGAACAAAAGGTCCTGGACTCGACATTGAAGATGACCTCTACGAGAATTTGAATATGGATGAAGATAGTTTGAATCTTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAATTGCTGGAGAATGGTGGTATTGATAGCTTGTTCAGGATCAAAAGCCTATCCGCAAAATCTGGTTGCCCTGGTGCTGCTGCTGCAGAGGGGTCATCCGTTGGTTTAGTTAATACTATGATGCGGCCAGCTAGCAGTAATGCAGCATCTGCAGATTCCGTGATGAGTGCGAAGACTGAACCAATTCTTTGTTATAACAATAAGCAAGAGCACTCTAGCGTATCATTTTCTGGCATGACTGGAGAGAGTAGCGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAGCCTCCATGGTGTTCTATAGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGTGATGCCGTAATGCGATACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCCTCTCGCAAAGTGAGGGCCGATACTAGAAGGCGTGTTAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1239 43.66 MGYICDFCGHQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHLQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPMNCYTGCPTAAELSSLWPFVLDLPSVSDACEQELGLMSIAENSAVNTWGPDDKAGQNVCGVDETNEFSNVDKSIWYGSSSMPQYLSKPHIMDQPITIDATSPQLHCPGTKGPGLDIEDDLYENLNMDEDSLNLENYEELFGVSLSYSEELLENGGIDSLFRIKSLSAKSGCPGAAAAEGSSVGLVNTMMRPASSNAASADSVMSAKTEPILCYNNKQEHSSVSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSIATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4629600 4634870 - Tan0018465.1 Tan02g0515 743141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0515 412 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan02g0515 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan02g0515 412 Pfam CCT motif 355 397 IPR010402 GO:0005515(InterPro)
Tan02g0515 412 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Tan02g0515 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515(InterPro)
Tan02g0515 412 CDD Bbox1_BBX-like 4 47 IPR049808 -
Tan02g0515 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0515 Tan-Chr2:4629600 Tan04g0803 Tan-Chr4:6838085 4.50E-12 dispersed
Tan05g0854 Tan-Chr5:6697492 Tan02g0515 Tan-Chr2:4629600 1.00E-46 transposed
Tan10g1360 Tan-Chr10:16812407 Tan02g0515 Tan-Chr2:4629600 3.80E-18 transposed
Tan02g0515 Tan-Chr2:4629600 Tan05g0997 Tan-Chr5:8320888 1.30E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26693 PF06203 CCT 2.70E-16 CL0281 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0515 - - - 0.0