Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0527 ATGATGTTCAACTATAAGAAAAGTTCACTGTTTTCCAAAATATTTCCTTTGGAACTTCTTCCTTGCAGTACATTTCGTACACATGCAAGAGAGAAAGATCAGAAAATGGATGAGAAGACAGAAACCAAAGAGTTATCAAGCTCTAATCTCTCCTCTTCTGCTTATAAAATCAGCTTTTTAGAGAAGAGAAAACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTTGGGAGACGGCCATTCCAAAGGCGAGAGCGATTCCACTCATGAGCAGGGTGAGGCAAAATCATCCCTCACTTCCTTTTTTCCAGCTGTCAGCAAGGAAGAATCCAGAAAGTGGATGGCATTTGAAATTGAAAACTTTGATATTAAAAAGACATACACAAAGAACTTCAGTCGAAGCTTTGGGTCATCTTCTATTGAACTCTTGGAAAGAATCATGACAGAGAGGACTGTAGAGGAGAACAAGTCATCGCTGCAGCTGACTTATGTTATCTCAGATGCAAGAAAACCAGATTGTCCCATCGTGTTTGCCAGTGATGCGTTCTTGGTTATGACTGGATATACGATGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAGACAGATAAGAATGAAGTAGCCAAAATACGAGATGCTATCAGAAAGGGGAATAGCTACTGTGGCAAGCTTTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGATTCCCATGGCAACATCATCAAACTTATTGGAATGCAGGTTGAGATCGGCAAAAACGCTGAAGTAAAAGAGAAGACCATGAGGTCCAGGTCCATTACAGAGGTCCAAGCTGTGAAAAGTCTAAGATCTTACATTCAGTCAAAAAGGTATGATGCTGATAGAAAGCACGAAGAGCCGGAAATAACTAACATCGATTATGCATTGCACAAGGCTGTGGATGATGAGAATATTGACACACCTGATAACCAAAAGGCTCAGTTAGATCTCATAAATGGTCTAAAGGATTCAAGCACAGAATCAGGATTATCTGGTCTTGTTTCCCCAATGAGGTTCAAAGAAAGGACTCTAGGCTCTGCAGTAGAACGTGAAGAAAAGACAGTTGTTGAGATATCAGTTTTGAAGCCTAAAGACGGTGATCGTGTTGCTAAAAGAGAAAGGGACATACGCCAGGGAATTGAATTGGCAACCACATTGGAACGAATCGAGAAGATATTTTTTATCACTAACCCAAGACTTCCTGATAATCCTATTATATTTGCATCTGATAGATTTCTTGACTCGACAGAATACACGTGTGAAGAAGTTCTAGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATAAAGTAGTTGTCTCAAAGATAAAAGATGCAATTGTAGAGCAGAGAGAAATCACCGTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTCGAATTTATTCCATTTGCAACCCATGCATGATAAGAAGGGTGAACTTCAATACTTCATTGGTGTGCAACTTCATCTAAAACCTTTGAGAGACCAACTTTTGGAACGAATGGAACATGAAAGTACTCAACTGGTCAAAGCTATAGCAGAAAATGTTGACAGGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTATGGGCAATCTACTGTCAGCCAGTCATACCAAGGCCTCACAAGAAAGACAATTCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATTGGACTCCATCATTTTAAGCCAATAAAACCACTGGGTTTTGGAGACATTGGCAGTGTTCATTTGGTAGAACTCAAAGGAACAAGAGAACTCTTTGCTATGAAGGCAATAGAGAAGTCAGTAATATTAAATCGTAACAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATATCCCTTTTGGATCATCCTTTCATGCCAACACTGTACTCTTCATTTCAGACACCTACGCACATTTTTCTGATTATAGACTTCTGCCCGGGTGGAGAGTTATTCGCCTTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCAGCAGAAGTTGTCATTGCTTTGGAATACCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAGAAGGATGGGCATATCGTCCTCACTGATTTTGATTTATCGTTTAAGACGCCCAACTTTCAAACCATAGAATCTCCAACACCAAAGAAGACTAAGAGATGTAGACATAAATCGCTACCAACCTTCGTCGTCGAACCTGTTGTAAAACTAAATTCATTCATTGGAACTGAAGAGTACATTGCTCCAGAGATCATAATGGGAGCAGGCCATAGTAGCTCTATTGACTGGTGGACTCTCGGTGTTTTGTTGTATGAGATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAAACAGGAAGAAAACATTTGCCAATATCTTGTTCAAGGACTTAACCTTCCCCTTCAGTATTCAGGTGAGTCTAGCAGCAAAGCAGCTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCGAGTACCGGTGCCGATGAAATCAAACGACACCCTTTTTTCCGTCAAATAAATTGGCCTAAAATTCGAACCATGACCCCACCATCATCAGAAGTAGCCCTTCAATTAATTGAGAGAGATCCAAAAGCTAATGATTTGAAGTGGGAAGATGGAGTGCTCAGTCATTCATCAATGAGCACTGATATTTTCTAA 2790 40.79 MMFNYKKSSLFSKIFPLELLPCSTFRTHAREKDQKMDEKTETKELSSSNLSSSAYKISFLEKRKPIEVFQVPASLGDGHSKGESDSTHEQGEAKSSLTSFFPAVSKEESRKWMAFEIENFDIKKTYTKNFSRSFGSSSIELLERIMTERTVEENKSSLQLTYVISDARKPDCPIVFASDAFLVMTGYTMEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKLIGMQVEIGKNAEVKEKTMRSRSITEVQAVKSLRSYIQSKRYDADRKHEEPEITNIDYALHKAVDDENIDTPDNQKAQLDLINGLKDSSTESGLSGLVSPMRFKERTLGSAVEREEKTVVEISVLKPKDGDRVAKRERDIRQGIELATTLERIEKIFFITNPRLPDNPIIFASDRFLDSTEYTCEEVLGRNFWFLQGPETDKVVVSKIKDAIVEQREITVQIINYTKSGKKFSNLFHLQPMHDKKGELQYFIGVQLHLKPLRDQLLERMEHESTQLVKAIAENVDRAVRELPDANLKPKNLWAIYCQPVIPRPHKKDNSSWIAIQKITSHGEKIGLHHFKPIKPLGFGDIGSVHLVELKGTRELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIIDFCPGGELFAFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFKTPNFQTIESPTPKKTKRCRHKSLPTFVVEPVVKLNSFIGTEEYIAPEIIMGAGHSSSIDWWTLGVLLYEMLYGRTPFKGKNRKKTFANILFKDLTFPFSIQVSLAAKQLIDALLQRDPARRLGSSTGADEIKRHPFFRQINWPKIRTMTPPSSEVALQLIERDPKANDLKWEDGVLSHSSMSTDIF 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4729130 4748862 + Tan0006161.1 Tan02g0527 743153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0527 929 Gene3D PAS domain 162 318 - -
Tan02g0527 929 FunFam Putative LOV domain-containing protein 678 892 - -
Tan02g0527 929 SMART pas_2 152 218 IPR000014 -
Tan02g0527 929 SMART pas_2 399 468 IPR000014 -
Tan02g0527 929 Pfam Protein kinase domain 597 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g0527 929 Pfam PAS domain 419 509 IPR000014 -
Tan02g0527 929 Pfam PAS domain 169 263 IPR000014 -
Tan02g0527 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan02g0527 929 CDD STKc_phototropin_like 592 894 - -
Tan02g0527 929 SMART pac_2 474 516 IPR001610 -
Tan02g0527 929 SMART pac_2 224 266 IPR001610 -
Tan02g0527 929 ProSiteProfiles PAC domain profile. 471 525 IPR000700 -
Tan02g0527 929 ProSiteProfiles Protein kinase domain profile. 594 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g0527 929 ProSiteProfiles PAC domain profile. 221 275 IPR000700 -
Tan02g0527 929 MobiDBLite consensus disorder prediction 73 96 - -
Tan02g0527 929 NCBIfam PAS domain S-box protein 174 269 IPR000014 -
Tan02g0527 929 NCBIfam PAS domain S-box protein 423 509 IPR000014 -
Tan02g0527 929 SUPERFAMILY PYP-like sensor domain (PAS domain) 412 510 IPR035965 -
Tan02g0527 929 CDD PAS 411 513 IPR000014 -
Tan02g0527 929 ProSiteProfiles PAS repeat profile. 147 220 IPR000014 -
Tan02g0527 929 CDD PAS 174 263 IPR000014 -
Tan02g0527 929 Gene3D PAS domain 386 546 - -
Tan02g0527 929 PANTHER FLIPPASE KINASE 1-RELATED 548 898 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Tan02g0527 929 Gene3D Transferase(Phosphotransferase) domain 1 678 894 - -
Tan02g0527 929 SUPERFAMILY Protein kinase-like (PK-like) 571 903 IPR011009 -
Tan02g0527 929 SMART serkin_6 594 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g0527 929 Gene3D Phosphorylase Kinase; domain 1 593 677 - -
Tan02g0527 929 SUPERFAMILY PYP-like sensor domain (PAS domain) 170 261 IPR035965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0527 Tan-Chr2:4729130 Tan05g1028 Tan-Chr5:8540759 4.30E-289 dispersed
Tan02g0526 Tan-Chr2:4728862 Tan02g0527 Tan-Chr2:4729130 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67190 PF00069 Pkinase 6.10E-62 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0527 K20715 - csv:101213364 1393.64