Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0536 ATGGATAATGAGGTGATTGAATTTGATATTGGATTGGGAGGAGGCAGTGGGAGAGAGGGAGATGACTATTCTATGGCTATGGTGCATAATTCGATCGAGGATGAGGAAATGATTGATAGCCCTCCTCTGAGCGGTCTTGGTGGTGGTGCTGGCAGTGGTGAGATTTATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGAAGGAATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCTTTCTATAATTCTTATGCTCGACGTGTTGGGTTTAGTACTCGTGTCAGTTCCTCCCGTCGGTCTAGGCGTGATGGAGCGATTATACAGAGGCAATTTGTTTGTGCCAAGGAGGGTTTTAGGAATATGAATGAGAAGCGAACCAAAGACAGAGAAATCAAGCGTCCTCGAACCATCACAAGGGTGGGTTGCAAAGCATCCTTGTCCGTAAAGATGCATGATTCTGGGAAATGGGTTGTCTCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGACCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTGATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGCAGGATTATGTCTGCACTAATAAAGGAGTATGGTGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGAAATTATATGAGGAATAACCGCCAAAGGAGCTTAGAAGGGGACATTCAACTGCTTTTGGATTACTTAAGGCAAATGCATTCTGAAAATCCTAACTTCTTCTATGCTGTGCAGGGAGAGGAGGAACAGTGTGCAGGCAATGTCTTTTGGGCTGATCCAAAGGCTCGGATGAACTATACTTACTTCGGTGATACTGTTACATTTGACACTACCTATAGATCAAACAGATATCGTCTGCCATTTGCTCCTTTCACTGGGGTGAATCACCATGGACAGCCTGTGTTGTTTGGTTGTGCTTTTCTAATAAATGAATCTGAAGCATCATTTAATTGGCTATTTAGAACGTGGCTTTTGGCAATGTCCGGTCGGCCACCTATGTCAATCACTACTGATCATGATGCAGTAATACAGTCAGCCATCACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTGTCACACGTGTTCCTTAAACACCCAAGCTTTGAAGCCGACTTCCATAAATGTGTAAACTTGACTGACTCCATCGAGGAATTTGAGTCCTGCTGGTTGTCACTTGTTGACAGATATGATCTCAGGGATCATGAGTGGCTTCAGACAGTTTACTCTGCTCGGAGGCAGTGGGTTCCAGTGTATTTGCGGAACACTTTTTTTGCTGAAATGTCTATTACACAACGAAGTGATAGCATGAATTCATATTTTGATGGGTATGTGAATGCTTCAACCAATTTGAGTCAGTTCTTCAAACTGTATGAAAAAGCTCTAGAGAGTCGGAATGAGAAAGAAGTGAAAGCAGATTATGATACAATGAACACTTCCCCTGTTCTGAAGACTCCATCTCCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAGCTGTTTTCAAGGTTTCAAGAGGAGTTAGTAGGCACGTTAACTTTTATGGCATCAAAGGCTGATGATGATGGGGAAACTATAACTTATCAAGTGGCCAAATTTGGAGAGGACCATAAAGCTCACTATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTTGAGTTTTCAGGTCTTCTGTGCAGACATATCTTGGCAGTCTTCAGAGTGACCAATGTGCTTACACTTCCATCTCATTACGTATTGAAACGATGGACAAGAAATGCAAAGAGTAATGTAATATTGGAGGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTACGTCACGAGGCTTTTAAATTCATAGAGGAAGGAGCAAAGACTGTTGATACATATAATATGGCAAAGGATGCTCTGCAGGAGGCTGCAAAAAGGGTTTCTCATACGACAAGGAATGATGGTAAAATTTCTACAATTAATGGGCGAATTAAACTGGACCCTGCAAATGACAGAAGCTATACAAATCATAGTAGTAGCAGGGATCATGAGGGGAGCTTGGATAAAAACATGTCTGAGGATGACTTGGACAAGAAAATCAATGAACTTACGAATGAGTTGGAGTGTGCAAATCGGAAGTGTGAAGTTTATCGGTCTAACCTTTTTTCAGTGCTGAAAGATATTGAGGACCACAAGTTGCAATTATCTATTAAAGTGCAGAACATAAAAATTAGTATGAAAGACAGCATTTGA 2373 41.89 MDNEVIEFDIGLGGGSGREGDDYSMAMVHNSIEDEEMIDSPPLSGLGGGAGSGEIYLPEGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEEQCAGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPMSITTDHDAVIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTVYSARRQWVPVYLRNTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGETITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYVLKRWTRNAKSNVILEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTVDTYNMAKDALQEAAKRVSHTTRNDGKISTINGRIKLDPANDRSYTNHSSSRDHEGSLDKNMSEDDLDKKINELTNELECANRKCEVYRSNLFSVLKDIEDHKLQLSIKVQNIKISMKDSI 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4780499 4783573 - Tan0017918.1 Tan02g0536 743162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0536 790 Coils Coil 733 760 - -
Tan02g0536 790 SMART 26again6 585 612 IPR006564 GO:0008270(InterPro)
Tan02g0536 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270(InterPro)
Tan02g0536 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 689 IPR031052 GO:0006355(InterPro)
Tan02g0536 790 MobiDBLite consensus disorder prediction 716 734 - -
Tan02g0536 790 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Tan02g0536 790 Pfam MULE transposase domain 294 387 IPR018289 -
Tan02g0536 790 Pfam SWIM zinc finger 582 607 IPR007527 GO:0008270(InterPro)
Tan02g0536 790 MobiDBLite consensus disorder prediction 686 734 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0536 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0536 Tan-Chr2:4780499 Tan05g1036 Tan-Chr5:8587179 3.10E-187 dispersed
Tan02g1231 Tan-Chr2:31318012 Tan02g0536 Tan-Chr2:4780499 3.50E-81 transposed
Tan10g0909 Tan-Chr10:7596050 Tan02g0536 Tan-Chr2:4780499 2.60E-111 transposed
Tan10g1231 Tan-Chr10:13232485 Tan02g0536 Tan-Chr2:4780499 1.50E-26 transposed
Tan02g0536 Tan-Chr2:4780499 Tan05g1035 Tan-Chr5:8587179 3.10E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26698 PF10551 MULE 4.20E-29 CL0219 Tan TF