Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0538 ATGTTGGATAACTCAGCCGTCAGTGGCGCCTCTTGCGCCGATCAATTTCTTGGATCAGAGCTCCTACTTCAAAATTCTTCACAAACCCATCTCTCCGATCCCAACATATCGCCGGGAAATCACCGGCAGAAGCTAAATCCGGCCGATTCAACCACCCTCACTAGCGGCGGTTCGTCCACGCGTCGCTCTCGCGGCCGCCCCGCCGGCTCAAAGAACAAGCCGAAGCCGCCGGTGATCGTAACACGTGACAGCCCCAATGTTCTGAGATCGCACGTGCTGGAGGTCTCGGCCGGCTACGATGTGGTTGAAACAATCGCCAGTTACGCAAGGCGCCGCCGCCACGGCCTTTGCATTCTCGCCGCCACCGGGGCTATCACGAACGTCAACTTGCGCCAGCCGGCGGCGCCGTCAGGAACTGTTGTGACGCTTCATGGCACGTTTGAGATTGTATCTCTGACCGGTACGGTATTGCCGCCTCCGGCGCCGCCGGTTTCCGGCAGGCTGACGATTTATTTGTCCAGCGGGCAAGGGCAGGTCGTGGGAGGAAGTGTCGTCGGGCCGTTGACAGCCTCCGTTCCGGTTGTATTGATGGTGGCGACATTTAAGAATGCGGTGTATGATCGGTTGTCACTGGACGAATCGTCGGCACCGGCTGTGCCATTGGCATCACTGCCCTCCGACGTTGCCGCGGGAACTCGGGACCGGGAGCCCGGCGACGGTTACAGTTGGAGTGGCAATGCATCAAGGCCTCCGACGACACTGTGA 765 59.74 MLDNSAVSGASCADQFLGSELLLQNSSQTHLSDPNISPGNHRQKLNPADSTTLTSGGSSTRRSRGRPAGSKNKPKPPVIVTRDSPNVLRSHVLEVSAGYDVVETIASYARRRRHGLCILAATGAITNVNLRQPAAPSGTVVTLHGTFEIVSLTGTVLPPPAPPVSGRLTIYLSSGQGQVVGGSVVGPLTASVPVVLMVATFKNAVYDRLSLDESSAPAVPLASLPSDVAAGTRDREPGDGYSWSGNASRPPTTL 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4800836 4802813 - Tan0005241.1 Tan02g0538 743164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0538 254 ProSiteProfiles PPC domain profile profile. 85 227 IPR005175 -
Tan02g0538 254 FunFam AT-hook motif nuclear-localized protein 88 217 - -
Tan02g0538 254 CDD DUF296 89 163 IPR005175 -
Tan02g0538 254 Gene3D - 88 218 - -
Tan02g0538 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 216 - -
Tan02g0538 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 215 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Tan02g0538 254 MobiDBLite consensus disorder prediction 28 84 - -
Tan02g0538 254 MobiDBLite consensus disorder prediction 225 254 - -
Tan02g0538 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 202 IPR005175 -
Tan02g0538 254 MobiDBLite consensus disorder prediction 28 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0538 Tan-Chr2:4800836 Tan06g2152 Tan-Chr6:71260477 1.10E-56 dispersed
Tan01g5168 Tan-Chr1:116753349 Tan02g0538 Tan-Chr2:4800836 2.20E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0538 - - - 0.0