Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0540 ATGTCGGTTTCCCAAGCCCTAGGTGGCACGTCCAGATGCGGCCGTGCGATCGGCCCTTCCCTCGATAAGATTGTCAAGAACGCGGCCTGGCGTAAGCATTCTCATCTTGTTTCCTCTTGCAAATCCGTTCTCGATAAGCTTGATTCTATTGCGGAAGCTGCTCTTGATCCTGCTTCCCCGCTTGCTGGCCTTTCACCGCCTGATGCGGAGTTTGTGCTCCAACCGCTCCTTTTTGCCCTCGATGCCGCCTACGTTAAGGTTGCTGAGCCCGCGCTTGAGTGCGTCTTCAAATTGTTCTCCCGCGGTCTTTTCCGTGGCGAGATCGAGCGGCCGGATGGCGAGGCGAATTCCGGTGCCAGTTCCATTGTGTATAGGATCGTTGAGTCTGTTTGCAAGTCGGGAGGTCTTGGCGATGAAGGAATTGAGCTCACTGTTCTCAGAGTGTTGCTCTCTGCGGTGCGATGCCCTTGTGTATTGATACGCGGGGATTGTTTAGTTAATGTTGTTCGGACTTGTTATAATGTGTATCTCGGTGGCTTAAGTGGTACGAATCAGATCTGTGCAAAATCCGTTCTAGGTCAAATAATGGTCATTGTTTTCAGTAGGGTGGAGGAGGACTCCATGGATGTTCCTACGAGGATAATTTCTGTGAGTGAATTATTGGAATTTACCGACAAGAACTTGAATGAAGGCAATTCTATATATTTTTGCCAGAACTTTATTAATGAGGTAATGGATGCCAGCGAAGGGATTGCAGAGAAGAAACTATATTCGTTTTCGGGACAATTGCAGAATGGCAATGCTTCGCCACTGAAAACTGACAATAAAGGTGAATCTGATGGGGGAGAAACGGAAGAAGTTAGTTGTAGTAAGATTAGGGAGGATGGATTCCATTTGTTTAAGAATTTGTGTAAATTGTCAATGAAATTCTCATCACCGGAGCACCCAGATGATCAGATTCTCTTAAGGGGGAAAATATTGTCTCTGGAACTGCTAAAGGTGATTATGGATAATGCAGGTCCAGTTTGGCGCACTAACGAGAGGTTTCTCAATGCTATCAAGCAATTTCTCTGCTTATCATTATTAAAAAACAGTGCCCTGTCTGCGATGGCCATCTTCCAGCTTCAATGTTCTATTTTTACGAGCTTGTTGACAAAATTTAGATCAGGATTGAAAGCAGAAATTGGTATCTTTTTTCCCATGCTTGTCCTCCGAGTGCTTGAGAATGTACTTCAGCCTAGTTTCTTGCAGAAAATGACCGTGCTCAATTTATTGGATAAGATCTCTCAAGATTCACAAATTATGGTCGACATTTTTGTCAACTATGATTGTGATGTTGATTCTCCAAATATTTCTGAGAGGATTGTGAATGGCCTTTTGAAAACTGCTCTTGGACCGCCTTCTGGTTCAACCACAACATTGTCTCCAGCACAGGATATTACATTTAGGCATGAATCTGTTAAGTGTTTGGTAAGCATCATTAACTCAATGGGAACTTGGATGGACCAACAACTGAAGCTAGATGATACATATTTTCTCAAGACTTCTGAGAATGACGCTACACCTGAGAATAATTTAAGTGGGGAGGAAACAGCTGCTGTTGACTCTGAGCTCCATCCGGATGGAAATTCTGAGTTCTCAGATGCTGCCACACTTGAGCAACGTAGAGCTTACAAGATCGAACTCCAGAAAGGTATTTCGCTGTTCAATAGGAAACCTTCCAGGGGTATCGAGTTTCTGATTAGCACAAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCTTCTTTTCTCAAGAATACTAACGGCCTGAATGAAACAGTCATTGGAGATTATTTGGGTGAAAGGGACGAATTCCCTTTGAAAGTTATGCATGCTTATGTTGATTCATTTAATTTTAAAGTGATGAACTTTGGTGAAGCAATAAGGTTTTTCCTGCGAGGCTTCAAGTTACCAGGAGAGGCACAAAAGATCGATCGCATCATGGAGAAGTTTGCTGAGCGGTACTGTAAATGTAACCCTGGTTCATTCACAAGTGCAGATACTGCTTATGTGCTTGCTTATTCTGTTATTATGCTGAACACAGATGCTCATAATAACATGGTGAAAGATAAGATGACAAAGGCTGATTTTATCCGGAATAATCGAGGAATTGATGATGGCAAAGATTTACCTGATGAGTATCTTGGTGCTCTTTACGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCAGCTTCACAAAGTAAGCAGGCAACTAGCATCAACAAACTTTTGGGCTTGGATGGTATTCTCAATCTAGTTTCTTGGAAGCAGACAGAAGAAAAAGCTGTTGGTGCAAACGGGCTTCTTATAAGGCACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCTGAATCTGTTTATCACGCGGTGACTGATGTAACAATATTGAGGTTTATGGTGGAAGTCTGCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTTGACCAAAGCGATGATAAACTTGCTACTTCTCAATGCTTACTAGGCTTTCGGCATGCTGTGCATGTCACAGCTGTTATGGGCTTGCAGACTCAAAGGGATGCTTTCGTGACATCCATGGCTAAGTTTACCTATCTTCATTGTGCTGCAGATATGAAACAAAAAAATGTTGAAGCTGTGAAGGCTATAATATCAATTGCCATAGAGGATGGTAATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAGAATTTACAATTATTGGGAGAGGGTGCACCACCCGATGCATCATTTTTGACATCATCAAATATTGAAACTGAAGAGAAAGCACTGAAGTCGGTGGGTTTATCATCTCTGAAGAAAAAGGGAGGTCTGCAAAATCCAGCTGTAATGGCTGTAGTTCGTGGAGGTTCATACGATAGCACCTCACTTGGAGTGAATACTCCAGGACCAGTAACTCCTGAACAGATTAACCACCTTATTTCAAACTTGAATTTGTTGGATCAAATAGGCAATTTTGAGTTGAACCACGTATTTGCACATAGTCAAAGTTTGAACAGTGAAGCAATAGTTGCATTTGTGAAGGCCCTTTGCAAAGTTGCTATTGCAGAGTTGCAGTCTCCAACAGACCCACGTGTGTTCAGCCTCACTAAATTAGTTGAAGTGGCGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGCATGTGGAGTGTTCTCTCTGATTTCTTTGTGTCCGTTGGCTTATCAGAGAATCTATCAGTTGCAATATTTGTGATGGACTCACTGAGGCAGCTCGCAATGAAATTTTTGGAGCGTGAGGAGCTTGCGAATTATAACTTCCAGAATGAATTTCTGAGACCCTTCGTAATTGTTATGCAGAAAAGCAGCTCCACAGAAATTAGGGAATTAATAGTTCGGTGCATTTCGCAGATGGTTCTCAGTCGCGTCAACAATGTGAAATCTGGATGGAAAAGTGTTTTTCTGGTTTTCACTGCTGCAGCTGCTGATGAGAGGAAGAATATTGTCTTATTGGCTTTTGAAACCATGGAAAAAATAGTTCGAGAATATTTTCCTTATATAACTGAGACTGAAACTACAACATTTACCGATTGCGTTCGATGTCTCATTACTTTCACAAATAGCAGATTTAACAGTGATGTCAGTCTCAATGCCATTGCGTTCCTTCGGTTTTGTGCTGTAAAACTTGCAGAAGGGGGACTTGTTTGCTACGAGATGGCTGGAGATAACAGTTCGTCCATTTCTCCGGATGCACCCACACCCGCACCCACACCCACACCCACACCCACACCCACAGATAAGGACGATTACGCTTCCTATTGGGTTCCTTTGCTCGCAGGGCTATCAAAGTTAACTTCTGATCCTAGATCACCAATCAGAAAAAGTTCCTTGGAAGTTCTTTTTAATATCCTAAGGGATCATGGCCATCTTTTCTCGCGTCAATTTTGGGTTGGTGTTATCAATACTGTAGTTTTCCCCATATTCAGTTCTTTGAATGACAAGAAAGAAGTGGACATGGATGAAAATGATGAATATTCAGAAGGAAGTACATGGGACTCTGATACCTGTGCAGTGGCAGCAGATTGTTTAGTAGATCTATTCGTTAGTTTTTTCAATGTTATTAGGTCACAACTACCCGGCGTGGTGTCAATTCTGACGGGATACATTAGGAGTCCGATCCAGGGTCCTGCCAGCACGGGCGTTGCTGCCTTAATGCGTTTGGCAGGCGACTTGGGTAACAGGCTTACCGAAAACGAATGGAGAGAGATTTTTCTTGCTTTGAAGGAAGCGGCCACATTAACCGTGCCTGGATTTATGAAGGTCCTGAGAACCATGGATGACGTCAGCATTCCGGGGATTTCTCAATCTTATTATGATGTGGATGTGGCTTCAGATCAAGGTTTGTCAACTGATGGTTTCGACGACGATGATCTGCAAACGGCCTCCTACATAGTTTCGAGAATGAAGAGTCATATTGCAATGCAACTCCTCATCATACAGGTCATTACTGATCTGTACAAGAACCATACCCAACCTTTCTCAGAAGCCAACATTTCCATCATTCTCGAGATCTTTTCTTCCATTGCCACACATGCCCAGAAACTGAATTCCGACACAACCCTTCAGAAGAAGCTACAGAAAGCTTGCTCCATCCTGGAGATATCCGACCCGCCCGTGGTTCACTTCGAAAACGAGTCTTATCAGAGCTACCTCAACTTCCTCCAGAATATGCTCGCGGATAATCCCTCATTGACTAATGCAACTCTTATAGAATCCGAACTCGTCACAGTATGTGAACAAATTTTGCATATTTACTTGAAGTGCACCGAGACGCCGGGCGAGCAGAAAGAAACCGACCAGCCTGTGCTACATTGGATTCTTCCATTGGGCTCAGCAAAGAAGGAGGAACTGGCTGCTCGTACGTCTCTAGTTGTCTCGGCGTTGCGGGTTCTACGCGGGTTCGAAAGGGACCTATTTAAAAGGTGTGTTCAACAGCTTTTCCCATTGTTGGTAGATCTTGTAAGGAGTGAACATAGCTCTGGAGAAGTTCAGCTTGTTTTGAGCAGCATATTTCAATCATGTATAGGCCCAATAATTATGCAATAA 5145 43.15 MSVSQALGGTSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSIAEAALDPASPLAGLSPPDAEFVLQPLLFALDAAYVKVAEPALECVFKLFSRGLFRGEIERPDGEANSGASSIVYRIVESVCKSGGLGDEGIELTVLRVLLSAVRCPCVLIRGDCLVNVVRTCYNVYLGGLSGTNQICAKSVLGQIMVIVFSRVEEDSMDVPTRIISVSELLEFTDKNLNEGNSIYFCQNFINEVMDASEGIAEKKLYSFSGQLQNGNASPLKTDNKGESDGGETEEVSCSKIREDGFHLFKNLCKLSMKFSSPEHPDDQILLRGKILSLELLKVIMDNAGPVWRTNERFLNAIKQFLCLSLLKNSALSAMAIFQLQCSIFTSLLTKFRSGLKAEIGIFFPMLVLRVLENVLQPSFLQKMTVLNLLDKISQDSQIMVDIFVNYDCDVDSPNISERIVNGLLKTALGPPSGSTTTLSPAQDITFRHESVKCLVSIINSMGTWMDQQLKLDDTYFLKTSENDATPENNLSGEETAAVDSELHPDGNSEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLISTKKVGGSPEEVASFLKNTNGLNETVIGDYLGERDEFPLKVMHAYVDSFNFKVMNFGEAIRFFLRGFKLPGEAQKIDRIMEKFAERYCKCNPGSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMTKADFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMNSDSSASQSKQATSINKLLGLDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEVCWGPMLAAFSVTLDQSDDKLATSQCLLGFRHAVHVTAVMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGNFLQEAWEHIFTCLSRIENLQLLGEGAPPDASFLTSSNIETEEKALKSVGLSSLKKKGGLQNPAVMAVVRGGSYDSTSLGVNTPGPVTPEQINHLISNLNLLDQIGNFELNHVFAHSQSLNSEAIVAFVKALCKVAIAELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVNNVKSGWKSVFLVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMAGDNSSSISPDAPTPAPTPTPTPTPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILRDHGHLFSRQFWVGVINTVVFPIFSSLNDKKEVDMDENDEYSEGSTWDSDTCAVAADCLVDLFVSFFNVIRSQLPGVVSILTGYIRSPIQGPASTGVAALMRLAGDLGNRLTENEWREIFLALKEAATLTVPGFMKVLRTMDDVSIPGISQSYYDVDVASDQGLSTDGFDDDDLQTASYIVSRMKSHIAMQLLIIQVITDLYKNHTQPFSEANISIILEIFSSIATHAQKLNSDTTLQKKLQKACSILEISDPPVVHFENESYQSYLNFLQNMLADNPSLTNATLIESELVTVCEQILHIYLKCTETPGEQKETDQPVLHWILPLGSAKKEELAARTSLVVSALRVLRGFERDLFKRCVQQLFPLLVDLVRSEHSSGEVQLVLSSIFQSCIGPIIMQ 1714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4851995 4862406 - Tan0008577.1 Tan02g0540 743166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0540 1714 Pfam Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain 20 206 IPR032629 -
Tan02g0540 1714 SUPERFAMILY Sec7 domain 555 746 IPR035999 GO:0005085(InterPro)|GO:0032012(InterPro)
Tan02g0540 1714 Gene3D - 633 753 IPR023394 -
Tan02g0540 1714 Pfam BIG2 C-terminal domain 1507 1705 IPR046455 -
Tan02g0540 1714 Pfam C-terminal region of Mon2 protein 1279 1346 IPR032817 -
Tan02g0540 1714 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 543 631 - -
Tan02g0540 1714 SUPERFAMILY ARM repeat 1078 1706 IPR016024 -
Tan02g0540 1714 Pfam Sec7 domain 559 740 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Tan02g0540 1714 SMART sec7_5 555 740 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Tan02g0540 1714 Pfam Mon2/Sec7/BIG1-like, HDS 1108 1190 IPR015403 -
Tan02g0540 1714 ProSiteProfiles SEC7 domain profile. 551 738 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Tan02g0540 1714 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 633 751 - -
Tan02g0540 1714 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 17 1659 - GO:0005802(PANTHER)
Tan02g0540 1714 Gene3D - 543 632 - -
Tan02g0540 1714 Gene3D - 889 1714 IPR011989 -
Tan02g0540 1714 Pfam Mon2/Sec7/BIG1-like, HUS domain 293 451 IPR032691 -
Tan02g0540 1714 MobiDBLite consensus disorder prediction 518 545 - -
Tan02g0540 1714 MobiDBLite consensus disorder prediction 1258 1280 - -
Tan02g0540 1714 CDD Sec7 558 740 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Tan02g0540 1714 MobiDBLite consensus disorder prediction 267 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0540 K18442 - - csv:101212521 3086.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0540 Tan-Chr2:4851995 Tan10g0347 Tan-Chr10:2815576 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33