Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0543 ATGGCTGCATTTGTAGCTATAATAGTCTACTTGGTTCTTTTGCAAACACCCAACATCTTTGCGGCTAAGGTTGAAGAGTGGAAATCTGCTACTGCAACATACACCAAAGAAACAGATGGTTCAATCATTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGACTAGCTATGGAAAATATAGCGCTGGACTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACCGTCATTCTAACCGCTACCGACTTCTGTCCTCCGAATTATGGCTTATCTTCTGATTATGGTGGATGGTGCAATTTCCCCAAAGAACACTTTGAGATGTCAGAGGCAGCATTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGCTGGATTGAGATTCACAGTTAGTGGTAATTCTCGCTTTTTTCAAGTTCTTATTACTAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAAGTGAAAGGATCAAGAACAGGATGGATACCACTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGGCAACCTCTCTCTTTCGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGTTGCACCTGCAAACTGGCAGTTCGGGCAGACATTTGAAGGGAAACAATTTTGA 756 43.25 MAAFVAIIVYLVLLQTPNIFAAKVEEWKSATATYTKETDGSIITEGACGYGDLHKTSYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSAGLRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPANWQFGQTFEGKQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4877190 4878289 - Tan0022246.1 Tan02g0543 743169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0543 251 SMART dpbb_1 62 149 IPR007112 -
Tan02g0543 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Tan02g0543 251 PANTHER EXPANSIN-A15 7 251 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Tan02g0543 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Tan02g0543 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Tan02g0543 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Tan02g0543 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Tan02g0543 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Tan02g0543 251 Gene3D - 13 155 IPR036908 -
Tan02g0543 251 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Tan02g0543 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Tan02g0543 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Tan02g0543 251 Gene3D - 156 251 IPR036749 -
Tan02g0543 251 SUPERFAMILY PHL pollen allergen 157 248 IPR036749 -
Tan02g0543 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Tan02g0543 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Tan02g0543 251 CDD DPBB_EXPA_N 26 154 - -
Tan02g0543 251 FunFam Expansin 159 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0543 Tan-Chr2:4877190 Tan04g1418 Tan-Chr4:16418460 9.50E-74 dispersed
Tan02g0543 Tan-Chr2:4877190 Tan05g0412 Tan-Chr5:2890306 4.30E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0543 - - - 0.0