Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0563 ATGAATATGGCTTGGCTCCTTTTATTTCTCCTTTCTATTCGAGGGATTTCAGAAGGGGCCTCAAGACCTGAGGTAGTGAAAGTTGGAGCTATTTTTTCCCTCAGTTCTGTTAATGGGAAAGTGTCCAAGATAGCCATAGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGCTATCCATATCCATACATGATGCAAATTACAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCCGACACAGTTGCCATCATCGGTCCGCAAGATGCTACAATGGCACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTATCATACACTGCATTGGACCCGGCGCTTGCGACTTTGCAGTATCCATATTTCATTCAAACAGCCCCAAATGATGAATTCCAGATGACTGCAATTGCAGATATGATTGGTTATTATGATTGGCATGACATAGTCGTTGTTTACACTGATGATGATCAATGTCGAAACGGTATGATTGCATTAGGGGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTTCCCCCTTACCCAACAGCAACTAGAACTCAAGTTCAAGATGCACTGGTAAAGATTAAAATGATGGAATCTCGAGTAATAGTATTATACACGTTTTCAAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTAGAATGATGGAACCTGGATTTGTTTGGATAGCCTCCAGTTGGCTGTCAACAGTAATTGATTCTTATTCACCACTTCCCTTGAAAACTGTCAACTCCATCCAAGGTGTTCTTACACTTCGTCTACACACACCCAATTCGAAAAGGAAGCAGTCTTTTATATCTAGTTGGAACAAGCTGAGTAATGGCTCCGTTGGGTTGAATACATATGGCCTATATGCATATGATACTGTTTGGCTGATTGCAAAAGGATTAAAAGAGTTGTTTGATCAAAATGGCACCATCTCATTCGCCAAAGATACACATGTTGGTAGTCTTACTGGTGAGAGCTTGGATTTTAGTTCACTGGGCATCTTTAATGAAGGAAAGGAGCTGCTTAACAATTTATTGAATATCAGCATGACTGGTCTGACAGGACCTATCCAGTTTCTAGATAGATCCCCTTTACATCCTTCATATGATATCTTAAATGTTGTGAAATCTGGTATGAAGAGAGTTGGATACTGGTCCAACCATTCCAGGTTATCTGTCGTGGCGCCAGAAACGTTGTATGGAAAACCAGCCAATCATTCTATGGCAACTCAACAGTTAAGCAGCACAATGTGGCCTGGGGGATCAACAATAAAGCCTCGTGGTTGGGTTCTTCCACTTGATGGAAGGCGGTTAAGAATTGGCGTTCCACGCAGAGTTAGTTATCAGGAATTTGTGACACCGGGAAATGGTAATGGAACAATCAAAGGATACTGCATTGATGTGTTCACTGCTGCCATCAATCTGCTCCCATATGCAGTTAATTATGAGTTCGTTTTGTTTGGAAATGGTGAGGAGAATCCTAGCTACTTTGAGCTTGTAAATAACGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTAGTCGGACAAAGGTTGTCGATTTTACGCAGCCTTATATCGACTCAGGACTAGTCGTGCTGGCCCCTGTCAAGAAGTTGAATTCAAGCCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGTTGCCACAGCATCCTTTTTCCTCCTCATTGGATTTGTTGTGTGGATTTTGGAACATCGTAAAAATGACGAATTCCGAGGACATCCTAGGACGCAATTTGTCACAATCCTCTGGTTCGGCTTCTCTACTCTGTTTTTTTCGCATAGAGAAAATGTCGTGAGCACGCTCGGACGTTGTGTGCTTGTCGTCTGGCTTTTCGTTGTTCTAATTATCAACTCGAGCTACACGGCTAGTCTGACATCGATATTCACAGTACAACAACTAGCCTCACCTATCACAGGAATTGATTCATTGATAACTAGCCATGTACGTATAGGATTCCAAGTTGGTTCATTTGCTGAGGGTTATTTAAGTGAGCAACTTAACGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCTGCCCTCAAGAACGGAACGGTCGGAGCTATCGTTGATGAACGACCATACATCGATCTCTTTCTCACCGAGCATTGCGATTTTTCGATTATGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCGCGAGACTCTCCATTAGCAGTGGACTTATCGACCGCCATACTCACTCTATCAGAGAACGGCCATCTTCAAAAGCTTCACGACAAATGGTTCTCGAGAAAGTCTTGCAGTTCTGGAGATTCTGATTTAGAACAGCTTCACTTACAGAGTTTCATCGGCCTGTTCTCCATTTGCGCCGGTGTCTGTTTATTCGCTCTTCTCCTCCACTTTCTCTTCACGGTCTGCCAATTCAACCGCCATTTAAAACAAGATCCGGAAGCTTCGACTTCGACAACCGCCGGCGATGGCGGTTCTACTTCTAGCCCTACGCGTCTCCGCAAATTTTTGGCGTTTGCAGACAAAAAGAGGGATCGAAAGACGAGCTATTCGAAAAGAAAGGTTGAAGACAATACATTTTCGAGTGAACGTCGAGAGGATTTTGGGAATTGA 2727 42.98 MNMAWLLLFLLSIRGISEGASRPEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSDTVAIIGPQDATMAHILSHLSNELHVPLLSYTALDPALATLQYPYFIQTAPNDEFQMTAIADMIGYYDWHDIVVVYTDDDQCRNGMIALGDKLEERSLKISSKVPLPPYPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMEPGFVWIASSWLSTVIDSYSPLPLKTVNSIQGVLTLRLHTPNSKRKQSFISSWNKLSNGSVGLNTYGLYAYDTVWLIAKGLKELFDQNGTISFAKDTHVGSLTGESLDFSSLGIFNEGKELLNNLLNISMTGLTGPIQFLDRSPLHPSYDILNVVKSGMKRVGYWSNHSRLSVVAPETLYGKPANHSMATQQLSSTMWPGGSTIKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFTAAINLLPYAVNYEFVLFGNGEENPSYFELVNNVALKEFDAAVGDIAIVTSRTKVVDFTQPYIDSGLVVLAPVKKLNSSPLAFLRPFTPMMWVATASFFLLIGFVVWILEHRKNDEFRGHPRTQFVTILWFGFSTLFFSHRENVVSTLGRCVLVVWLFVVLIINSSYTASLTSIFTVQQLASPITGIDSLITSHVRIGFQVGSFAEGYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDERPYIDLFLTEHCDFSIMGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKLHDKWFSRKSCSSGDSDLEQLHLQSFIGLFSICAGVCLFALLLHFLFTVCQFNRHLKQDPEASTSTTAGDGGSTSSPTRLRKFLAFADKKRDRKTSYSKRKVEDNTFSSERREDFGN 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4991829 5000643 - Tan0011263.1 Tan02g0563 743189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0563 908 CDD GluR_Plant 459 797 - -
Tan02g0563 908 Gene3D - 141 413 - -
Tan02g0563 908 MobiDBLite consensus disorder prediction 878 908 - -
Tan02g0563 908 MobiDBLite consensus disorder prediction 852 871 - -
Tan02g0563 908 Gene3D - 732 759 - -
Tan02g0563 908 Gene3D - 44 389 - -
Tan02g0563 908 Gene3D - 572 707 - -
Tan02g0563 908 Pfam Bacterial extracellular solute-binding proteins, family 3 471 582 IPR001638 -
Tan02g0563 908 FunFam Glutamate receptor 456 572 - -
Tan02g0563 908 Pfam Ligand-gated ion channel 799 827 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0563 908 SUPERFAMILY Periplasmic binding protein-like I 20 452 IPR028082 -
Tan02g0563 908 FunFam Glutamate receptor 698 801 - -
Tan02g0563 908 Gene3D - 455 571 - -
Tan02g0563 908 FunFam Glutamate receptor 141 301 - -
Tan02g0563 908 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 873 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan02g0563 908 SMART GluR_14 462 799 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0563 908 Pfam Receptor family ligand binding region 43 399 IPR001828 -
Tan02g0563 908 SUPERFAMILY Periplasmic binding protein-like II 438 799 - -
Tan02g0563 908 PIRSF IGluLR_plant 1 906 IPR017103 -
Tan02g0563 908 Gene3D - 760 797 - -
Tan02g0563 908 FunFam Glutamate receptor 572 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0563 Tan-Chr2:4991829 Tan02g0565 Tan-Chr2:4991829 0.00E+00 dispersed
Tan02g0563 Tan-Chr2:4991829 Tan02g0564 Tan-Chr2:4991829 0.00E+00 tandem
Tan01g5130 Tan-Chr1:116637833 Tan02g0563 Tan-Chr2:4991829 2.90E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0563 K05387 - csv:101208602 1491.09