Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0564 ATGAAGTACATGGTGTCCGACACAGTTGCCATCATCGGTCCGCAAGATGCTACAATGGCACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTATCATACACTGCATTGGACCCGGCGCTTGCGACTTTGCAGTATCCATATTTCATTCAAACAGCCCCAAATGATGAATTCCAGATGACTGCAATTGCAGATATGATTGGTTATTATGATTGGCATGACATAGTCGTTGTTTACACTGATGATGATCAATGTCGAAACGGTATGATTGCATTAGGGGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTTCCCCCTTACCCAACAGCAACTAGAACTCAAGTTCAAGATGCACTGGTAAAGATTAAAATGATGGAATCTCGAGTAATAGTATTATACACGTTTTCAAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTAGAATGATGGAACCTGGATTTGTTTGGATAGCCTCCAGTTGGCTGTCAACAGTAATTGATTCTTATTCACCACTTCCCTTGAAAACTGTCAACTCCATCCAAGGTGTTCTTACACTTCGTCTACACACACCCAATTCGAAAAGGAAGCAGTCTTTTATATCTAGTTGGAACAAGCTGAGTAATGGCTCCGTTGGGTTGAATACATATGGCCTATATGCATATGATACTGTTTGGCTGATTGCAAAAGGATTAAAAGAGTTGTTTGATCAAAATGGCACCATCTCATTCGCCAAAGATACACATGTTGGTAGTCTTACTGGTGAGAGCTTGGATTTTAGTTCACTGGGCATCTTTAATGAAGGAAAGGAGCTGCTTAACAATTTATTGAATATCAGCATGACTGGTCTGACAGGACCTATCCAGTTTCTAGATAGATCCCCTTTACATCCTTCATATGATATCTTAAATGTTGTGAAATCTGGTATGAAGAGAGTTGGATACTGGTCCAACCATTCCAGGTTATCTGTCGTGGCGCCAGAAACGTTGTATGGAAAACCAGCCAATCATTCTATGGCAACTCAACAGTTAAGCAGCACAATGTGGCCTGGGGGATCAACAATAAAGCCTCGTGGTTGGGTTCTTCCACTTGATGGAAGGCGGTTAAGAATTGGCGTTCCACGCAGAGTTAGTTATCAGGAATTTGTGACACCGGGAAATGGTAATGGAACAATCAAAGGATACTGCATTGATGTGTTCACTGCTGCCATCAATCTGCTCCCATATGCAGTTAATTATGAGTTCGTTTTGTTTGGAAATGGTGAGGAGAATCCTAGCTACTTTGAGCTTGTAAATAACGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTAGTCGGACAAAGGTTGTCGATTTTACGCAGCCTTATATCGACTCAGGACTAGTCGTGCTGGCCCCTGTCAAGAAGTTGAATTCAAGCCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGTTGCCACAGCATCCTTTTTCCTCCTCATTGGATTTGTTGTGTGGATTTTGGAACATCGTAAAAATGACGAATTCCGAGGACATCCTAGGACGCAATTTGTCACAATCCTCTGGTTCGGCTTCTCTACTCTGTTTTTTTCGCATAGAGAAAATGTCGTGAGCACGCTCGGACGTTGTGTGCTTGTCGTCTGGCTTTTCGTTGTTCTAATTATCAACTCGAGCTACACGGCTAGTCTGACATCGATATTCACAGTACAACAACTAGCCTCACCTATCACAGGAATTGATTCATTGATAACTAGCCATGTACGTATAGGATTCCAAGTTGGTTCATTTGCTGAGGGTTATTTAAGTGAGCAACTTAACGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCTGCCCTCAAGAACGGAACGGTCGGAGCTATCGTTGATGAACGACCATACATCGATCTCTTTCTCACCGAGCATTGCGATTTTTCGATTATGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCGCGAGACTCTCCATTAGCAGTGGACTTATCGACCGCCATACTCACTCTATCAGAGAACGGCCATCTTCAAAAGCTTCACGACAAATGGTTCTCGAGAAAGTCTTGCAGTTCTGGAGATTCTGATTTAGAACAGCTTCACTTACAGAGTTTCATCGGCCTGTTCTCCATTTGCGCCGGTGTCTGTTTATTCGCTCTTCTCCTCCACTTTCTCTTCACGGTCTGCCAATTCAACCGCCATTTAAAACAAGATCCGGAAGCTTCGACTTCGACAACCGCCGGCGATGGCGGTTCTACTTCTAGCCCTACGCGTCTCCGCAAATTTTTGGCGTTTGCAGACAAAAAGAGGGATCGAAAGACGAGCTATTCGAAAAGAAAGGTTGAAGACAATACATTTTCGAGTGAACGTCGAGAGGATTTTGGGAATTGA 2478 43.1 MKYMVSDTVAIIGPQDATMAHILSHLSNELHVPLLSYTALDPALATLQYPYFIQTAPNDEFQMTAIADMIGYYDWHDIVVVYTDDDQCRNGMIALGDKLEERSLKISSKVPLPPYPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMEPGFVWIASSWLSTVIDSYSPLPLKTVNSIQGVLTLRLHTPNSKRKQSFISSWNKLSNGSVGLNTYGLYAYDTVWLIAKGLKELFDQNGTISFAKDTHVGSLTGESLDFSSLGIFNEGKELLNNLLNISMTGLTGPIQFLDRSPLHPSYDILNVVKSGMKRVGYWSNHSRLSVVAPETLYGKPANHSMATQQLSSTMWPGGSTIKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFTAAINLLPYAVNYEFVLFGNGEENPSYFELVNNVALKEFDAAVGDIAIVTSRTKVVDFTQPYIDSGLVVLAPVKKLNSSPLAFLRPFTPMMWVATASFFLLIGFVVWILEHRKNDEFRGHPRTQFVTILWFGFSTLFFSHRENVVSTLGRCVLVVWLFVVLIINSSYTASLTSIFTVQQLASPITGIDSLITSHVRIGFQVGSFAEGYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDERPYIDLFLTEHCDFSIMGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKLHDKWFSRKSCSSGDSDLEQLHLQSFIGLFSICAGVCLFALLLHFLFTVCQFNRHLKQDPEASTSTTAGDGGSTSSPTRLRKFLAFADKKRDRKTSYSKRKVEDNTFSSERREDFGN 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4991829 5000643 - Tan0011263.2 Tan02g0564 743190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0564 825 Gene3D - 641 721 - -
Tan02g0564 825 SUPERFAMILY Periplasmic binding protein-like II 355 716 - -
Tan02g0564 825 FunFam Glutamate receptor 489 619 - -
Tan02g0564 825 Gene3D - 372 488 - -
Tan02g0564 825 FunFam Glutamate receptor 58 218 - -
Tan02g0564 825 Pfam Receptor family ligand binding region 7 316 IPR001828 -
Tan02g0564 825 Gene3D - 3 306 - -
Tan02g0564 825 Pfam Ligand-gated ion channel 716 744 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0564 825 FunFam Glutamate receptor 615 718 - -
Tan02g0564 825 Gene3D - 489 628 - -
Tan02g0564 825 SUPERFAMILY Periplasmic binding protein-like I 7 369 IPR028082 -
Tan02g0564 825 SMART GluR_14 379 716 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan02g0564 825 FunFam Glutamate receptor 373 489 - -
Tan02g0564 825 CDD GluR_Plant 376 714 - -
Tan02g0564 825 PRINTS Metabotropic glutamate GPCR signature 78 95 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Tan02g0564 825 PRINTS Metabotropic glutamate GPCR signature 43 62 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Tan02g0564 825 PRINTS Metabotropic glutamate GPCR signature 11 37 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Tan02g0564 825 PRINTS Metabotropic glutamate GPCR signature 62 78 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Tan02g0564 825 MobiDBLite consensus disorder prediction 769 788 - -
Tan02g0564 825 Pfam Bacterial extracellular solute-binding proteins, family 3 388 499 IPR001638 -
Tan02g0564 825 MobiDBLite consensus disorder prediction 795 825 - -
Tan02g0564 825 PIRSF IGluLR_plant 2 823 IPR017103 -
Tan02g0564 825 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 790 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan02g0564 825 Gene3D - 58 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0564 Tan-Chr2:4991829 Tan03g2176 Tan-Chr3:76350376 1.80E-262 dispersed
Tan02g0563 Tan-Chr2:4991829 Tan02g0564 Tan-Chr2:4991829 0.00E+00 tandem
Tan02g0564 Tan-Chr2:4991829 Tan02g0565 Tan-Chr2:4991829 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0564 K05387 - csv:101208602 1353.96