Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0572 ATGGCATCGGCGCAGAACCCAGCGCCGAACGTGGATCTCTTCGATGCCTACTTTCGACGCGCCGATTTGGACCGCGATGGTCGAATTAGTGGCGCTGAAGCGGTTGCCTTCTTTCAAGGCTCTGGATTGCACAAACAGGTTCTTGCTCAGATTTGGGCTCTTTCGGACCCGAGACAGATTGGTTTCCTTGGTCGGGCGGAGTTTTATAACGCCCTTAGGCTGGTCACTGTAGCCCAGAGTAAGAGGGAACTTACTCCTGAGATTGTGAAAGCAGCATTGTTTAGCCCAGCTGCAGCTAAAATACCAGCACCACAAATAAATTTCAATACCCAGCCTGCATCTCAGTTCAACTCTACTCCAGCATTACCTGCACCTCAGAGTGGCATTGGTACTTCGATTCCCTCCCAAAGTTCTGGGTTGGAATCTCAGGTTGCTCGAAATGTCACCACGAATGTTCCGCTCGTCCCTGCTAGAGAGAATCAATCAGTAAGGCCTCCGTTGGCAACTTCGAATTCTGCTTTCCGTCCAGCTCAGGGATTTCCAGGAGTAGGTACCATATCGGGGCCGCCTTCAACAAATTCTAGCATCTCGAATGATTGGGTAAGTGACCATGCTGGTGGAGTTCAGGGGACACCCTCACAACCTCCGATCAGAGGAGTCAGTCCTGCTGGAACGCAGGTCGGATTTGGACAATCAAGTGCAGGATTAACAACTTCTCTACCCCCAAGGCCTCAGACTGCTCCTGGAATAAAGCCGGCTACACCATCACCTGTGGATAGTAAAGTGCAAGGTTTTTCTGGAAATGGGACTGCTTCTGGATCATATTTTGGAGGAGATCTCTTTGCTGCAAGCCCAGTTCCTTCAAAACAAGATGTCCCCTCAGATAAATTGTCTGCCGGCAATAAAATTTCCACGTCAGTCACTGTTCCTGTACCTTCTGCTACACAACCAATAGTTAGAGCAGGTTCCCTTGATTCTTTGCAAAATTCATTTATGAAACCTCCTCTTGCTAATCAGCCCACACGGAACCAGCCACTTGGGAAGCCCAATCAACAGAACATATTGCAACCTGCTTCCTCTGGATTATCAACAGGTTCTCAAAACTCTGTTTCTGGTCAGTCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACTAAAGTTTTTGTTGAGGTGGATAAAGATAGAGATGGAAAAATTACCGGTGAAGAAGCACGCAACTTGTTCTTGAGTTGGAGACTGCCGAGAGAGGTTTTAAAGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATTGCACTCTATTTGTTGGAGCGGCATAGGGAAGGGCACATTCTTCCTGCTATGCTTCCTAGCAACATCGTGTTTGATTTTTCCAGCAATGGTCATCCTGTGACTCCAGCTGCATCTAACTATAGCAATGCAGCTTGGAGACCCACAGCTGGTTACCAACAGCACCAAGGGGTTCCTGGGTCTGGTAATTTGCATGGAGCTCCTACAGTTGGAGTACGACCGCCTATACCTGCTGCTGCCTCCCCAGTTGAGGATGAGCCACCGACCAATAAACCTAAATCAAAGGTTCCTGTGCTGGAAAAAAATCTTGTTGGTCAACTTAGCACAGAGGAGCAGAACTCCCTCAACTCAAAGTTCCAAGAAGCAGCAGATGCTGAGAAAAAGGTTGAAGAATTGGAGAAAGAAATTTTGGAATCTAGACAGAAAATTGAGTTTTATCGTACTAAAATGCAGGAACTTGTTTTGTATAAGAGCAGATGTGACAATCGGCTGAATGAAATCTCTGAAAGAGTAGCTTCAGATAAACGTGAGGTAGAGTCCCTTGCTAAGAAATATGAAGAGAAATATAAACAATCTGGTGACGTAGCCTCCAGATTAACCGTTGAAGAAGCTACATTCCGTGATATACAGGAGAAGAAGATGGAACTGTATCAGGCAATTGTGAAGATGGAACAAGATGGTAGTGCAGATGGCGTTCTTCAGGTTCGTGCTGATCGTATTCAGGCAGATATTGAAGAATTAGTGAAAGCTCTCAATGAACGCTGCAAGACTTATGGTTTGCGTGCAAAACCAATAACTCTGACTGAACTCCCTTTCGGTTGGCAACCTGGCATCCAAGTGGGAGCTGCTGACTGGGATGAAGATTGGGATAGATTTGAAGAGGAAGGTTTCACTGTTGTCAAGGAGCTCACTCTTGATGTGCAAAATGTCATAGCGCCTCCGAAGCAGAAATCTAAGTCAGTGCAAAAAGAAAAAGATTCAGCCGTTGACAGCCAAAAAGTTACACCTGCACCAGATGCTGATACCAAGGAAGGAGGTTCTACACCAGATGGTGATTCCAAGGGAGAGAAACCTCCTAGTATGGATGAAACAGCTGTTGAAAATGGTTCCGCACACGATAATAAAAGTGAAGACGGGTCAGCCAGAAGTGCTCCTAACAGCCCCTTTGCAAATAGTGTTATTGGAAGTCCCAAAGAATATATGGATTCCAATTTTGGAAAGGCTGCTGGCTTTGATGCTTCACCCCGTGATAAGGATGCTCTAAGTGATCACGGAGGTGCGGGATCTGTGTTCTCTGGTGACAAGAGCTATGACGAACCAGCTTGGGGAACGTTTGATGCAAATGATGATATTGACTCTGTTTGGGGCTTTAACGCTGGAGGTTCCGCTAAGACCGACAATGATGTTAACCGAGACAACTATTTTTTCGATTCTGGGGATTTGGGCTTGAATCCTATTAGAACAGATCCATTCCAGGCTAAGAGAAGCACATTCGCTTTTGACGAGTCTGTTCCTAGCACCCCACTCTTCAACTCGGGCAATTCACCGCACAATTACCATGAAGGATCGGAAGCAAGTTTTGATAGCTTCTCGAGGTTTGATTCTTCCAGCGTGCATGACAGTGGTTTTTTCCCTCCACGGGACACATTTGCACGGTTCGACTCAATGCGTAGCAGTAGAGACTTCGACCAGGGTCCTGGATTCTCATCATTTGGTCAATTTGATACATCGCACAGCAGTAGAGACCTCGATCAGGGTGGATCCTCATCATTGACGCGATTCGATTCAATGCGCAGCAGTAAAGACTTTGATCAGGGATTCCCCTCGTTGTCACGATTCGATTCAATGCGCAGCAGCAAAGACTTCGATCAGGGATTCCCTTCGTTGTCACGATTCGATTCAACGCGCAGCAGCAAAGACTTCGATCAGGGCTTCCCTTCGTTGTCACGATTCGATTCAATGCGCAGCAGCAAAGATTTTGATCAGGGTCATGGATTCCCATCATTCGACGATCCAGATCCTTTTGGATCGACAGGGCCGTTCCGGGCATCCCTGGATAATCAAACTCCGAAGAAAGGATCGGATAATTGGAGTGCATTTTAG 3435 46.7 MASAQNPAPNVDLFDAYFRRADLDRDGRISGAEAVAFFQGSGLHKQVLAQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPEIVKAALFSPAAAKIPAPQINFNTQPASQFNSTPALPAPQSGIGTSIPSQSSGLESQVARNVTTNVPLVPARENQSVRPPLATSNSAFRPAQGFPGVGTISGPPSTNSSISNDWVSDHAGGVQGTPSQPPIRGVSPAGTQVGFGQSSAGLTTSLPPRPQTAPGIKPATPSPVDSKVQGFSGNGTASGSYFGGDLFAASPVPSKQDVPSDKLSAGNKISTSVTVPVPSATQPIVRAGSLDSLQNSFMKPPLANQPTRNQPLGKPNQQNILQPASSGLSTGSQNSVSGQSQRPWPRMTQTDVQKYTKVFVEVDKDRDGKITGEEARNLFLSWRLPREVLKQVWDLSDQDNDSMLSVREFCIALYLLERHREGHILPAMLPSNIVFDFSSNGHPVTPAASNYSNAAWRPTAGYQQHQGVPGSGNLHGAPTVGVRPPIPAAASPVEDEPPTNKPKSKVPVLEKNLVGQLSTEEQNSLNSKFQEAADAEKKVEELEKEILESRQKIEFYRTKMQELVLYKSRCDNRLNEISERVASDKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYQAIVKMEQDGSADGVLQVRADRIQADIEELVKALNERCKTYGLRAKPITLTELPFGWQPGIQVGAADWDEDWDRFEEEGFTVVKELTLDVQNVIAPPKQKSKSVQKEKDSAVDSQKVTPAPDADTKEGGSTPDGDSKGEKPPSMDETAVENGSAHDNKSEDGSARSAPNSPFANSVIGSPKEYMDSNFGKAAGFDASPRDKDALSDHGGAGSVFSGDKSYDEPAWGTFDANDDIDSVWGFNAGGSAKTDNDVNRDNYFFDSGDLGLNPIRTDPFQAKRSTFAFDESVPSTPLFNSGNSPHNYHEGSEASFDSFSRFDSSSVHDSGFFPPRDTFARFDSMRSSRDFDQGPGFSSFGQFDTSHSSRDLDQGGSSSLTRFDSMRSSKDFDQGFPSLSRFDSMRSSKDFDQGFPSLSRFDSTRSSKDFDQGFPSLSRFDSMRSSKDFDQGHGFPSFDDPDPFGSTGPFRASLDNQTPKKGSDNWSAF 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5043252 5053115 - Tan0009225.1 Tan02g0572 743198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0572 1144 Coils Coil 559 593 - -
Tan02g0572 1144 SMART eh_3 377 473 IPR000261 GO:0005515(InterPro)
Tan02g0572 1144 SMART eh_3 2 98 IPR000261 GO:0005515(InterPro)
Tan02g0572 1144 MobiDBLite consensus disorder prediction 758 882 - -
Tan02g0572 1144 CDD EH 14 80 IPR000261 GO:0005515(InterPro)
Tan02g0572 1144 SUPERFAMILY EF-hand 10 88 IPR011992 -
Tan02g0572 1144 PANTHER EH DOMAIN 5 1002 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Tan02g0572 1144 MobiDBLite consensus disorder prediction 520 539 - -
Tan02g0572 1144 MobiDBLite consensus disorder prediction 1008 1097 - -
Tan02g0572 1144 Gene3D - 9 104 - -
Tan02g0572 1144 ProSiteProfiles EF-hand calcium-binding domain profile. 421 453 IPR002048 GO:0005509(InterPro)
Tan02g0572 1144 SUPERFAMILY EF-hand 375 468 IPR011992 -
Tan02g0572 1144 MobiDBLite consensus disorder prediction 948 969 - -
Tan02g0572 1144 Gene3D - 380 468 - -
Tan02g0572 1144 MobiDBLite consensus disorder prediction 185 244 - -
Tan02g0572 1144 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515(InterPro)
Tan02g0572 1144 MobiDBLite consensus disorder prediction 1125 1144 - -
Tan02g0572 1144 MobiDBLite consensus disorder prediction 160 176 - -
Tan02g0572 1144 SMART efh_1 422 450 IPR002048 GO:0005509(InterPro)
Tan02g0572 1144 SMART efh_1 13 41 IPR002048 GO:0005509(InterPro)
Tan02g0572 1144 SMART efh_1 388 416 IPR002048 GO:0005509(InterPro)
Tan02g0572 1144 MobiDBLite consensus disorder prediction 329 382 - -
Tan02g0572 1144 MobiDBLite consensus disorder prediction 1008 1144 - -
Tan02g0572 1144 Coils Coil 608 628 - -
Tan02g0572 1144 ProSiteProfiles EH domain profile. 385 468 IPR000261 GO:0005515(InterPro)
Tan02g0572 1144 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509(InterPro)
Tan02g0572 1144 Pfam EF hand 15 33 IPR002048 GO:0005509(InterPro)
Tan02g0572 1144 CDD EH 389 455 IPR000261 GO:0005515(InterPro)
Tan02g0572 1144 MobiDBLite consensus disorder prediction 789 805 - -
Tan02g0572 1144 MobiDBLite consensus disorder prediction 160 259 - -
Tan02g0572 1144 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509(InterPro)
Tan02g0572 1144 Pfam Cytoskeletal-regulatory complex EF hand 379 466 IPR000261 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0572 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5126 Tan-Chr1:116595125 Tan02g0572 Tan-Chr2:5043252 1.00E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41